View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9520_low_2 (Length: 251)
Name: NF9520_low_2
Description: NF9520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9520_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 32706914 - 32706698
Alignment:
| Q |
21 |
catgcttaaagggatatctgggatatttggaagtgaaattgatgctccacgcctatagctgctatacctgtgtcttggaaagtagaatttgtaatcgtcg |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32706914 |
catgcttaaagggatatctgggatatttggaagtgaaattgatgcaccacgcctatagctgctatgcctgtgtcttggaaagtagaatttgtaatcgtcg |
32706815 |
T |
|
| Q |
121 |
ttacctgaaatcgacgcattctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaatataata |
220 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32706814 |
ttagctgaaatcgacgcattctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaatataata |
32706715 |
T |
|
| Q |
221 |
aagaggaaggagctaat |
237 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
32706714 |
aagaggaaggagctaat |
32706698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 32749306 - 32749254
Alignment:
| Q |
161 |
agtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaa |
213 |
Q |
| |
|
||||||| |||| |||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
32749306 |
agtgaaagcagcatagtaccaattttcaatctctacaaacatagaaatccaaa |
32749254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 3001712 - 3001615
Alignment:
| Q |
21 |
catgcttaaagggatatctgggatatttggaagtgaaattgatgctccacgcctatagctgctatacctgtgtcttggaaagtagaatttgtaatcgt |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3001712 |
catgcttaaagggatatgtgggatatttggaagtgaaattgatgcaccacgcctatacctgctatacctgtgtcttggagagtagaatttgtaatcgt |
3001615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 3001291 - 3001217
Alignment:
| Q |
137 |
cattctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatcca |
211 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
3001291 |
cattctggtataggaaaaagtaacagtgaaaacagcacagtaccaattttcaatatctacaaacaaagaaatcca |
3001217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University