View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9521_1 (Length: 1296)
Name: NF9521_1
Description: NF9521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9521_1 |
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Alignment Details
Target: chr1 (Bit Score: 720; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 21 - 878
Target Start/End: Complemental strand, 34909067 - 34908210
Alignment:
| Q |
21 |
catcatcatccaatctttccaatagcacaacacctaattcttacccatttgtactgaatacttctacattttcttctggatttggaacatcagctcctgc |
120 |
Q |
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| T |
34909067 |
catcatcatccaatctttccaatagcacaacacctaattcttacccatttgtaccgaatacttctacattttcttctggatttggaacatcagctcctgc |
34908968 |
T |
|
| Q |
121 |
cttcagttcatcggcttttggtttatcaacatcagcagcagcaccttctacttttccctcatccacacctctgtttggtgacaattctttgtcgcaggca |
220 |
Q |
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| T |
34908967 |
cttcagttcatcggcttttggtttatcgacatcagcagcagcaccttctacttttccctcatccacacctctgtttggtgacaattcttcgtcgcaggca |
34908868 |
T |
|
| Q |
221 |
tttagaccatctgcatccctgtttaatactgctgctccaggtacatcttcaccatttttcacaagcagttttcgcaacactcaaccatcccaattattta |
320 |
Q |
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| T |
34908867 |
tttagaccatctgcatccctgtttaatactgctgctcgaggtacatctgcaccatttttcacaagcagttttcgcaacactcaaccatcccaattattta |
34908768 |
T |
|
| Q |
321 |
gctctgcagcccctacaaatgcacagtctgcttctgatttcggtcagaataccgctcccattgggcagactgctgctttaagtcaatcaagcttgttcag |
420 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34908767 |
gctctgcagcccctacaaatgcacagtctgcttctgatttcggtcagaataccgctcccattgggcagactgctgctttaagtcaatcaagcttgttcag |
34908668 |
T |
|
| Q |
421 |
ttcacctccatctgggcttgttggaaacatttactcaagcggtgcatcactctcatgtaatgatccgacaggttttggtcaaacagcggtgagtagtttt |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
34908667 |
ttcacctccatctgggcttgttggaaacatttactcaagcggtgcatcactctcatgtaatgatccaacaggttttggtcaaacagcggtgagtaatttt |
34908568 |
T |
|
| Q |
521 |
gataatgcnnnnnnnnnnnnnnnnnnnnnnnccgttaaagatcacagtgtgtttatgatccaagatacaatgtagttaatggttgggatttacttcccaa |
620 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34908567 |
gataatgcttttcacttttaattttttttttccgttaaagatcacagtgtgtttatgatccaagatataatgtagttaatggttgggatttacttcccaa |
34908468 |
T |
|
| Q |
621 |
cctgtcatgctttttacaaaaccagttgtcattgttctataggaattacatataaatgatcaattaaagattcctacgacatccaccacctccaccaagc |
720 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34908467 |
cctgtcatgctgtttacaaaaccagttgtcattgttctataggaattacatataaatgatcgattaaagattcctacgacatccaccacctccaccaagc |
34908368 |
T |
|
| Q |
721 |
ccaagcatgttaggcagggttgtttgtgatgataaataaatttcagtaaagtacaaccatccctcctactagtggttaaatattaaacaagccgttgtaa |
820 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34908367 |
ccaagcctgttaggcagggttatttgtgatgataaataaatttcagtaaagtacaaccatccctcctactagtggttaaatattaaacaagccgttgtaa |
34908268 |
T |
|
| Q |
821 |
accnnnnnnntgaaaattgtttgtatgaaatatgattgtatcatttaaacattaaaaa |
878 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34908267 |
accaagaaaatgaaaattgtttgtatgaaatatgattgtatcatttaaacattaaaaa |
34908210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 897 - 1296
Target Start/End: Complemental strand, 34908130 - 34907731
Alignment:
| Q |
897 |
tctgagcttttgggagggttgatccttgacaaggtatcagttaaatttggcccttgttaccccattccttataataagcattaaatttgagtggctaagt |
996 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34908130 |
tctgagcttttgggagggttgatccttgacaaggtatcagttaaatttggcccttgctaccccattccttataataaacattaaatttgagtggctaagt |
34908031 |
T |
|
| Q |
997 |
gtatgtataaaccattccgatgtctatacctagatgactaatcctttgagttgattctttagaagtttatgtactgcattataggaaaacattagttgtg |
1096 |
Q |
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| T |
34908030 |
gtatgtataaaccgttccgatgtctatacctagatgactaatcctttgagttgattatttagaagtttatgtactgcattataggaaaacattagttgtg |
34907931 |
T |
|
| Q |
1097 |
aggatgtctcaacttgattagtctatctcacctgtagatctggcctagagcacaatatgattagatctgcacttttcaccttctttgaattattggtgtt |
1196 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34907930 |
aggatgtttcaacttgattagtctatctcacctgtagatctggcctagagcacaatatgattagatctgcacgtttcaccttctttgaattattggtgtt |
34907831 |
T |
|
| Q |
1197 |
aatgatatgtgaactcagcataattggagatacttcctaatgattgatttacttgtatgtatatatttatgattttgtgattaaacttagcatatttgta |
1296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34907830 |
aatgatatgtgaactcagcataattggagatacttcctaatgattgatttacttgtatgtatatatttatgattttgtgattaaacttagcatatttgta |
34907731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 1080 - 1296
Target Start/End: Complemental strand, 34894382 - 34894169
Alignment:
| Q |
1080 |
ggaaaacattagttgtgaggatgtctcaacttgattagtctatctca-cctgtagatctggcctagagcacaatatgattagatctgcacttttcacctt |
1178 |
Q |
| |
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||||||| | |||| ||||||||||||||||||||||| |||||| | |||||||| |||| ||||| || ||||| | |||||||| ||||||||| |
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| T |
34894382 |
ggaaaacgtcagttatgaggatgtctcaacttgattaggctatctaaacctgtagacctggtgtagagaactatatgtgttgatctgcatgtttcacctt |
34894283 |
T |
|
| Q |
1179 |
ctttgaattattggtgttaatgatatgtgaactcagcataattggagatacttcctaatgattgatttacttgtatgtatatatttatgattttgtgatt |
1278 |
Q |
| |
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|||||||||||||||||||||| | || ||||||||| ||||| |||||||||| | ||| |||| ||| ||| |||||||||||||||||||| |
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| T |
34894282 |
ctttgaattattggtgttaatg----gaaaagtcagcataaacggagagacttcctaataaatgaattacctgtgtgtgaatatttatgattttgtgatt |
34894187 |
T |
|
| Q |
1279 |
aaacttagcatatttgta |
1296 |
Q |
| |
|
|||||| |||| |||||| |
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| T |
34894186 |
aaacttggcatctttgta |
34894169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 465 - 519
Target Start/End: Complemental strand, 34894756 - 34894702
Alignment:
| Q |
465 |
catcactctcatgtaatgatccgacaggttttggtcaaacagcggtgagtagttt |
519 |
Q |
| |
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|||||||| ||| ||||| ||||||||||||||| ||| |||||||||||||||| |
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| T |
34894756 |
catcactcacatctaatgctccgacaggttttggacaagcagcggtgagtagttt |
34894702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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