View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9521_2 (Length: 920)
Name: NF9521_2
Description: NF9521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9521_2 |
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Alignment Details
Target: chr2 (Bit Score: 576; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 29 - 628
Target Start/End: Original strand, 29672216 - 29672815
Alignment:
| Q |
29 |
agatttgagttgattatcgaaatcataacggcaaacggtggttaaatcaccgttaggtgtgacacgaatatgataaggaatatcatcttcagacatagct |
128 |
Q |
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| T |
29672216 |
agatttgagttgattatcgaaatcataacggcaaacggtggttaaatcaccgttaggtgtgacacgaatatgataaggaatatcatcttcagacatagct |
29672315 |
T |
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| Q |
129 |
aacaaacggttattgaaataaaccaaaccagcgttagcaacacccattccgtgggtcccatcaacaagcccacagaggctacgagcatagtaaagtgcta |
228 |
Q |
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| T |
29672316 |
aacaaacggttattgaaataaaccaaaccagcgttagcaacacccattccgtgggtcccatcaacaagcccacagaggctacgagcatagtaaagtgcta |
29672415 |
T |
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| Q |
229 |
aacgtgctatgcctgaatgaccatgaagttcacctatggcttttggaaaaacgggccgacccagggctttttcttgggccaaacggtgggtttcggtgaa |
328 |
Q |
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| T |
29672416 |
aacgtgctatgcctgaatgaccatgaagttcacctatggcttttggaaaaacgggccggcccagggctttttcttgggccaaacggtgggtttcggtgaa |
29672515 |
T |
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| Q |
329 |
gcggcaagagtaactgacggagccgtttgtgaatttaacggcgtggaccataccgtctccgtcgaagaagtggtgaccggctactggctcgtaaagtgga |
428 |
Q |
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| T |
29672516 |
gcggcaagagtaacttacggagccgtttgtgaatttaacggcgtggaccataccgtctccgtcgaagaagtggtgaccggctactggctcgtaaagtgga |
29672615 |
T |
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| Q |
429 |
ttggcgccgttacggaggtaaacaccgtcaatgttggttgggattttgccggtaattggaagagattgggttaccgggtgttccggtactggggcgaagt |
528 |
Q |
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| T |
29672616 |
ttggcgccgttacggaggtaaacaccgtcaatgttggttgggattttgccggtaattggaagagattgggttaccgggtgttccggtactggggcgaagt |
29672715 |
T |
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| Q |
529 |
taccggcaatttggacacgtgggtcggaggtttttggtagtgggtgtttctgttcttgtttgattaaggttgtttcgacgaagtcaagggcggtggcggc |
628 |
Q |
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| T |
29672716 |
taccggcaatttgaacacgtgggtcggaggttttgggtagtgggtgtttttgttcttgtttgattaaggttgtttcgacgaagtcgagggcggtggcggc |
29672815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 764 - 920
Target Start/End: Original strand, 29672951 - 29673107
Alignment:
| Q |
764 |
aggaaaaggtagtgttgtttgaagtgagcatgagattttgttgttttgggagatagatcttttcttctttaaagtgattgaatttgatcttgaatctttg |
863 |
Q |
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| T |
29672951 |
aggaaaaggtagtgttgtttgaagtgagcatgagattttgttgttttgggagatagatcttttcttctttaaagtgattgaatttgatcttgaatctttg |
29673050 |
T |
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| Q |
864 |
aaaggagaagagtatgaagatgatgaaccaagtttggtgttaatccatgtgtttgat |
920 |
Q |
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| T |
29673051 |
aaaggagaagagtatgaagatgatgaaccaagtttggtgttaatccatgtgtttgat |
29673107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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