View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9521_3 (Length: 761)

Name: NF9521_3
Description: NF9521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9521_3
NF9521_3
[»] chr8 (2 HSPs)
chr8 (544-717)||(12933811-12933984)
chr8 (567-604)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (544-717)||(28608621-28608794)
chr4 (544-694)||(14177081-14177231)
chr4 (552-605)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (537-574)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (537-574)||(796698-796735)
chr6 (537-574)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (537-574)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 544 - 717
Target Start/End: Original strand, 12933811 - 12933984
Alignment:
Q  544 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 642  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 12933909  T
Q  643 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga 717  Q
    |||||||||| |||||  | |||||||| || || |||||||| || ||||| | ||| ||||| || |||||||    
T  12933910 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga 12933984  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 604
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  567 catggagatttggaagaggagatttatatggagcaacc 604  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 544 - 717
Target Start/End: Complemental strand, 28608794 - 28608621
Alignment:
Q  544 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 642  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  ||||||||||||||| ||| || || ||||| | ||| |||| |    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt 28608696  T
Q  643 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga 717  Q
    |||||||||| |||||  | |||||||| || || |||||||| || ||||| | ||| ||||| || |||||||    
T  28608695 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga 28608621  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 544 - 694
Target Start/End: Original strand, 14177081 - 14177231
Alignment:
Q  544 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 642  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 14177179  T
Q  643 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggta 694  Q
    |||||||||| |||||  | |||||||| || || |||||||| || |||||    
T  14177180 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggta 14177231  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 605
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  552 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 605  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 574
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  537 gagcagttggatgtgaaaactgcatttcttcatggaga 574  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 574
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  537 gagcagttggatgtgaaaactgcatttcttcatggaga 574  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 574
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  537 gagcagttggatgtgaaaactgcatttcttcatggaga 574  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 574
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  537 gagcagttggatgtgaaaactgcatttcttcatggaga 574  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

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