View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9521_4 (Length: 464)
Name: NF9521_4
Description: NF9521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9521_4 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 30 - 237
Target Start/End: Original strand, 50931245 - 50931452
Alignment:
| Q |
30 |
ccctcctccataaacacgtaagtacctttgaatatattcaaactatgcattttttccctctatttttgattcacaatattgttaacatacaatttaaatc |
129 |
Q |
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| T |
50931245 |
ccctcctccataaacacgtaagtacctttgaatatattcaaactatgcattttttccctctattttagattcacaatatcgttaacatacaatttaaatc |
50931344 |
T |
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| Q |
130 |
ctgttataaactatgaagcaatttttgaacaaaattactaaaaccagtataaaaatagctatttagaaatgaattttatattctcaaatcataaataacc |
229 |
Q |
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| T |
50931345 |
ctgttataaactatgaagcaatttttgaacaaaattactaaaaccaatataaaaatagctatttagaaatgaattttatattctcaaatcataaataacc |
50931444 |
T |
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| Q |
230 |
ctagaagt |
237 |
Q |
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| T |
50931445 |
ccagaagt |
50931452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 289 - 448
Target Start/End: Original strand, 50931504 - 50931663
Alignment:
| Q |
289 |
aataacatgaatttcgatcagttatgattttgatgatcaacataaacatgaaaatcttgtatgtaattgatgctatgatgattacctgtccaataacacc |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50931504 |
aataacatgaatttcgatcagttatgattttgatgatcaacataaacatgaaaatcttgtatgtaattgatgctatgatgattacctgtccaataactcc |
50931603 |
T |
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| Q |
389 |
atcacacttatcaccaatcaaagcaatgatatcttcaactgaaagaattgttttcttctc |
448 |
Q |
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| T |
50931604 |
atcacacttatcaccaatcaaagcaatgatatcttcaactgaaagaattgttttcttctc |
50931663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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