View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9521_7 (Length: 315)
Name: NF9521_7
Description: NF9521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9521_7 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 4 - 309
Target Start/End: Complemental strand, 50932121 - 50931819
Alignment:
| Q |
4 |
acatcatcattccatgatcaagcaaccaaaaagtcaaagtcttctaaatccatcaatttcattggtcagaaacatattaatattatccactgtttcacac |
103 |
Q |
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| T |
50932121 |
acatcatcattccatgatcaagcaaccaaaaagtcaaagtcttctaaatccatcaatttcattggtcagaaacatattaatattatccactgtttcacac |
50932022 |
T |
|
| Q |
104 |
cgaatcagtcaatcaatctcttatattattattatnnnnnnnnnnnnnnnnntaagcaacaaagcaacccgttacgaaaagttcgttcatcaccaccttg |
203 |
Q |
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| T |
50932021 |
cgaatcagtcaatcaatctcttatattattattattactactactacta---taagcaacaaagcaacccgttacgaaaagttcgttcatcaccaccttg |
50931925 |
T |
|
| Q |
204 |
actcactccactcattcaatggcgaaaccagtttcaattcaagtatggaacccaaatggaaaatacagagttgttagcacaaaatcaatgcctggaactc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50931924 |
actcactccactcattcaatggcgaaaccagtttcaattcaagtatggaacccaaatggaaaatacagagttgttagcacaaaatcaatgcctggaactc |
50931825 |
T |
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| Q |
304 |
gttgga |
309 |
Q |
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|||||| |
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| T |
50931824 |
gttgga |
50931819 |
T |
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