View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9521_9 (Length: 305)

Name: NF9521_9
Description: NF9521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9521_9
NF9521_9
[»] scaffold0024 (4 HSPs)
scaffold0024 (1-74)||(60340-60413)
scaffold0024 (150-226)||(60186-60257)
scaffold0024 (100-145)||(60247-60292)
scaffold0024 (249-293)||(60118-60162)
[»] chr7 (8 HSPs)
chr7 (100-185)||(10596225-10596315)
chr7 (96-174)||(23777262-23777345)
chr7 (254-293)||(27305596-27305635)
chr7 (96-161)||(19367294-19367364)
chr7 (141-171)||(31305384-31305414)
chr7 (124-185)||(23803160-23803221)
chr7 (265-293)||(23803129-23803157)
chr7 (143-187)||(33247077-33247121)
[»] chr6 (9 HSPs)
chr6 (96-224)||(18271860-18271988)
chr6 (249-293)||(18271792-18271836)
chr6 (141-185)||(20836819-20836863)
chr6 (122-181)||(12852094-12852153)
chr6 (128-179)||(33590868-33590919)
chr6 (96-129)||(9619423-9619456)
chr6 (142-187)||(33427866-33427911)
chr6 (249-293)||(20836726-20836770)
chr6 (100-128)||(31350951-31350979)
[»] chr2 (9 HSPs)
chr2 (96-184)||(27080869-27080957)
chr2 (99-181)||(1483904-1483991)
chr2 (142-224)||(5722939-5723021)
chr2 (122-172)||(7836757-7836807)
chr2 (96-160)||(14108565-14108634)
chr2 (249-293)||(14108685-14108729)
chr2 (180-224)||(33381897-33381941)
chr2 (106-174)||(31099028-31099101)
chr2 (249-293)||(27081002-27081046)
[»] chr5 (10 HSPs)
chr5 (96-174)||(43259695-43259778)
chr5 (105-174)||(5791987-5792060)
chr5 (133-192)||(10476390-10476449)
chr5 (96-174)||(35996035-35996118)
chr5 (96-128)||(19914547-19914579)
chr5 (96-128)||(27514337-27514369)
chr5 (122-168)||(29445308-29445354)
chr5 (249-293)||(19914422-19914466)
chr5 (99-139)||(22921030-22921070)
chr5 (253-293)||(39797409-39797449)
[»] chr3 (8 HSPs)
chr3 (99-173)||(55216628-55216707)
chr3 (122-186)||(41264960-41265024)
chr3 (96-128)||(8473119-8473151)
chr3 (96-174)||(26661866-26661949)
chr3 (249-293)||(40654169-40654214)
chr3 (96-128)||(29630007-29630039)
chr3 (249-293)||(33186242-33186286)
chr3 (265-293)||(33186278-33186306)
[»] chr4 (12 HSPs)
chr4 (96-200)||(20678382-20678484)
chr4 (96-185)||(19747363-19747456)
chr4 (96-185)||(19792350-19792443)
chr4 (99-224)||(7672701-7672824)
chr4 (96-174)||(42540348-42540431)
chr4 (249-293)||(43364185-43364229)
chr4 (99-174)||(43955440-43955515)
chr4 (102-180)||(8483692-8483770)
chr4 (122-185)||(3257628-3257691)
chr4 (139-174)||(10382039-10382074)
chr4 (250-293)||(23780341-23780384)
chr4 (99-185)||(10395256-10395342)
[»] chr1 (5 HSPs)
chr1 (122-186)||(5993776-5993840)
chr1 (122-224)||(45376571-45376668)
chr1 (250-285)||(32567183-32567218)
chr1 (128-185)||(28924941-28924998)
chr1 (96-185)||(29321386-29321475)
[»] chr8 (2 HSPs)
chr8 (255-286)||(11781680-11781711)
chr8 (249-293)||(26099364-26099408)
[»] scaffold0603 (1 HSPs)
scaffold0603 (142-174)||(7313-7345)
[»] scaffold0086 (1 HSPs)
scaffold0086 (141-185)||(20587-20631)


Alignment Details
Target: scaffold0024 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 60413 - 60340
Alignment:
Q  1 ctatatcactgttgtgtagcggaactttaacaaactgctctcttccgccactgacaacactattgaaattaagg 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  60413 ctatatcactgttgtgtagcggaactttaacaaactgctctcttccgccaccgacaacactattgaaattaagg 60340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 60257 - 60186
Alignment:
Q  150 cagttcagttcgattcgaaacagtttggttcagttcagctcggaacagttcagttcgatgactaaaattcaatttaa 226  Q
    |||||||||||||||||||||||||     |||||||| |||||||||||||||||  | |||||||||||||||||    
T  60257 cagttcagttcgattcgaaacagtt-----cagttcagttcggaacagttcagttctgtaactaaaattcaatttaa 60186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 60292 - 60247
Alignment:
Q  100 gaaccattactaacagttctgaaactgaaacaattcagtttagttc 145  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||    
T  60292 gaaccattactaatagttctgaaactgaaacaattcagttcagttc 60247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 60162 - 60118
Alignment:
Q  249 caaaggtatcaataataacaattcagttcggtttgaaacagttca 293  Q
    |||||||||||||||||||| |||||||| |||||||||||||||    
T  60162 caaaggtatcaataataacagttcagttcagtttgaaacagttca 60118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 10596315 - 10596225
Alignment:
Q  100 gaaccattactaacagttctgaaact-----gaaacaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggttcagttc 185  Q
    ||||||||||||||||||||||||||     |||||| |||||||||||||||||||||||| |||||||| ||||||||  |||||||||    
T  10596315 gaaccattactaacagttctgaaacttaactgaaacagttcagtttagttcaaaacagttcaattcgattcaaaacagttcagttcagttc 10596225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 23777345 - 23777262
Alignment:
Q  96 aactgaaccattactaacagttctgaaactgaa-----acaattcagtttagttcaaaacagttcagttcgattcgaaacagtt 174  Q
    ||||||| |||||||||||||||||||||||||     ||| |||||||   ||||||||||||||||||||||||||||||||    
T  23777345 aactgaatcattactaacagttctgaaactgaactgaaacagttcagttcttttcaaaacagttcagttcgattcgaaacagtt 23777262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 27305635 - 27305596
Alignment:
Q  254 gtatcaataataacaattcagttcggtttgaaacagttca 293  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  27305635 gtatcaataataataattcagttcggtttgaaacagttca 27305596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 19367364 - 19367294
Alignment:
Q  96 aactgaaccattactaacagttctgaaactg-----aaacaattcagtttagttcaaaacagttcagttcg 161  Q
    |||||||||||||| ||||||||||||||||     ||||| ||||||| |||| ||||||||||||||||    
T  19367364 aactgaaccattaccaacagttctgaaactgaacttaaacagttcagttcagttgaaaacagttcagttcg 19367294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 31305414 - 31305384
Alignment:
Q  141 agttcaaaacagttcagttcgattcgaaaca 171  Q
    |||||||||||||||||||||||||||||||    
T  31305414 agttcaaaacagttcagttcgattcgaaaca 31305384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 23803221 - 23803160
Alignment:
Q  124 ctgaaacaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggttcagttc 185  Q
    |||||| |||||||||  |||||||||| ||||||||||||  |||||||| | ||||||||    
T  23803221 ctgaaataattcagttcggttcaaaacaattcagttcgattataaacagttcgattcagttc 23803160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 293
Target Start/End: Complemental strand, 23803157 - 23803129
Alignment:
Q  265 aacaattcagttcggtttgaaacagttca 293  Q
    |||||||||||||||||||||||||||||    
T  23803157 aacaattcagttcggtttgaaacagttca 23803129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 33247077 - 33247121
Alignment:
Q  143 ttcaaaacagttcagttcgattcgaaacagtttggttcagttcag 187  Q
    ||||||||| || |||||||||| |||||||| ||||||||||||    
T  33247077 ttcaaaacaatttagttcgattcaaaacagttcggttcagttcag 33247121  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 224
Target Start/End: Complemental strand, 18271988 - 18271860
Alignment:
Q  96 aactgaaccattactaacagttctgaa-----actgaaacaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggttcagttcagctc 190  Q
    |||| ||||||||||||||||||||||     |||||| || |||| || ||||||||| |||||||||||||||||||||     ||||||| ||| ||    
T  18271988 aactaaaccattactaacagttctgaatctgaactgaagcagttcaattcagttcaaaatagttcagttcgattcgaaaca-----gttcagtgcagttc 18271894  T
Q  191 ggaacagttcagttcgatgactaaaattcaattt 224  Q
    |||||||||||||||  | |||||||||||||||    
T  18271893 ggaacagttcagttcagtaactaaaattcaattt 18271860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 18271836 - 18271792
Alignment:
Q  249 caaaggtatcaataataacaattcagttcggtttgaaacagttca 293  Q
    ||||||||||||||||||||||||||||| ||| | |||||||||    
T  18271836 caaaggtatcaataataacaattcagttcagttcggaacagttca 18271792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 20836863 - 20836819
Alignment:
Q  141 agttcaaaacagttcagttcgattcgaaacagtttggttcagttc 185  Q
    |||||||||||||||| |||||||||||||||||  |||||||||    
T  20836863 agttcaaaacagttcaattcgattcgaaacagttcagttcagttc 20836819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 12852094 - 12852153
Alignment:
Q  122 aactgaaacaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggttca 181  Q
    |||||||||| ||| |||  |||||||| |||||||||||||| ||||||||| ||||||    
T  12852094 aactgaaacagttcggttcggttcaaaatagttcagttcgatttgaaacagttcggttca 12852153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 33590919 - 33590868
Alignment:
Q  128 aacaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggtt 179  Q
    ||||||||||||  ||||||||||||| |||| |||| ||||||||||||||    
T  33590919 aacaattcagttcggttcaaaacagttaagtttgattagaaacagtttggtt 33590868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 9619423 - 9619456
Alignment:
Q  96 aactgaaccattactaacagttctgaaactgaaa 129  Q
    ||||||||||||||||||| ||||||||||||||    
T  9619423 aactgaaccattactaacaattctgaaactgaaa 9619456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 33427911 - 33427866
Alignment:
Q  142 gttcaaaacagttcagttcgattcgaaacagtttggttcagttcag 187  Q
    |||||||||| ||||||| ||||||||| |||| ||||||||||||    
T  33427911 gttcaaaacaattcagtttgattcgaaatagttcggttcagttcag 33427866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 20836770 - 20836726
Alignment:
Q  249 caaaggtatcaataataacaattcagttcggtttgaaacagttca 293  Q
    |||||||||||||||||||| |||| ||| ||||| |||||||||    
T  20836770 caaaggtatcaataataacagttcaattcagtttggaacagttca 20836726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 31350951 - 31350979
Alignment:
Q  100 gaaccattactaacagttctgaaactgaa 128  Q
    |||||||||||||||||||||||||||||    
T  31350951 gaaccattactaacagttctgaaactgaa 31350979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 27080869 - 27080957
Alignment:
Q  96 aactgaaccattactaacagttctgaaactgaaacaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggttcagtt 184  Q
    ||||||||||||||||||||||  |||||||||   |  ||||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  27080869 aactgaaccattactaacagttaagaaactgaactgaaacagttcagttcaaaacagttcagttcgattcgaaacagttcagttcagtt 27080957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 1483904 - 1483991
Alignment:
Q  99 tgaaccattactaacagttctgaaactgaa-----acaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggttca 181  Q
    |||||||||||||||| |||||||||||||     |||||| ||||  |||||||||||||| |||||||| ||||||||| ||||||    
T  1483904 tgaaccattactaacaattctgaaactgaattgaaacaatttagttcggttcaaaacagttccgttcgatttgaaacagttcggttca 1483991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 5723021 - 5722939
Alignment:
Q  142 gttcaaaacagttcagttcgattcgaaacagtttggttcagttcagctcggaacagttcagttcgatgactaaaattcaattt 224  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||| |  | |  |||||||||||| | |||||||||||||||    
T  5723021 gttcaaaacagttcatttcgattagaaaaagtttggttcagttcggaacagttcagttcagttcggtaactaaaattcaattt 5722939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 7836757 - 7836807
Alignment:
Q  122 aactgaaacaattcagtttagttcaaaacagttcagttcgattcgaaacag 172  Q
    |||||||||||||||||| | |||||||||||||| |||||||||||||||    
T  7836757 aactgaaacaattcagttcatttcaaaacagttcaattcgattcgaaacag 7836807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 14108565 - 14108634
Alignment:
Q  96 aactgaaccattactaacagttctgaaactgaa-----acaattcagtttagttcaaaacagttcagttc 160  Q
    |||||||||||||||||||||||||||||| ||     |||||||||||| |||| ||||| ||||||||    
T  14108565 aactgaaccattactaacagttctgaaacttaactcaaacaattcagtttggttcgaaacaattcagttc 14108634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 14108685 - 14108729
Alignment:
Q  249 caaaggtatcaataataacaattcagttcggtttgaaacagttca 293  Q
    |||||||||||||||||||| |||||||| ||||| |||||||||    
T  14108685 caaaggtatcaataataacagttcagttcagtttggaacagttca 14108729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 33381897 - 33381941
Alignment:
Q  180 cagttcagctcggaacagttcagttcgatgactaaaattcaattt 224  Q
    |||||||| |||||||||||||||||| | |||||||||||||||    
T  33381897 cagttcagttcggaacagttcagttcggtaactaaaattcaattt 33381941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 31099101 - 31099028
Alignment:
Q  106 ttactaacagttctgaaactgaa-----acaattcagtttagttcaaaacagttcagttcgattcgaaacagtt 174  Q
    ||||||||| |||||||||||||     ||| ||| ||| ||||||||||||||| |||| |||||||||||||    
T  31099101 ttactaacaattctgaaactgaactaaaacagttcggttcagttcaaaacagttcggttcaattcgaaacagtt 31099028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 27081002 - 27081046
Alignment:
Q  249 caaaggtatcaataataacaattcagttcggtttgaaacagttca 293  Q
    |||||||||||||||||| | ||||| || |||||||||||||||    
T  27081002 caaaggtatcaataataatagttcagatcagtttgaaacagttca 27081046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 43259695 - 43259778
Alignment:
Q  96 aactgaaccattactaacagttctgaaa-----ctgaaacaattcagtttagttcaaaacagttcagttcgattcgaaacagtt 174  Q
    |||||||| |||||||||||||||||||     |||||||||||||||| ||||| |||||||| |||||||||||||||||||    
T  43259695 aactgaacaattactaacagttctgaaattgaactgaaacaattcagttcagttcgaaacagtttagttcgattcgaaacagtt 43259778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 5792060 - 5791987
Alignment:
Q  105 attactaacagttctgaaactgaa----acaattcagtttagttcaaaacagttcagttcgattcgaaacagtt 174  Q
    |||| |||||||||||||||||||    ||| |||||||  |||||||||||||||||||||||||||||||||    
T  5792060 attattaacagttctgaaactgaatgaaacagttcagttcggttcaaaacagttcagttcgattcgaaacagtt 5791987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 10476390 - 10476449
Alignment:
Q  133 ttcagtttagttcaaaacagttcagttcgattcgaaacagtttggttcagttcagctcgg 192  Q
    |||||||  ||||||||||||||||||||||||||||||||| | |||||||||| ||||    
T  10476390 ttcagttcggttcaaaacagttcagttcgattcgaaacagttcgattcagttcagttcgg 10476449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 35996118 - 35996035
Alignment:
Q  96 aactgaaccattactaacagttctgaaactgaa-----acaattcagtttagttcaaaacagttcagttcgattcgaaacagtt 174  Q
    ||||||||||||||||||| |||||||||||||     ||| ||  ||| ||||||||||||||  ||||||||||||||||||    
T  35996118 aactgaaccattactaacaattctgaaactgaactgaaacagttttgttcagttcaaaacagtttggttcgattcgaaacagtt 35996035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 19914579 - 19914547
Alignment:
Q  96 aactgaaccattactaacagttctgaaactgaa 128  Q
    |||||||||||||||||||||||||||||||||    
T  19914579 aactgaaccattactaacagttctgaaactgaa 19914547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 27514337 - 27514369
Alignment:
Q  96 aactgaaccattactaacagttctgaaactgaa 128  Q
    |||||||||||||||||||||||||||||||||    
T  27514337 aactgaaccattactaacagttctgaaactgaa 27514369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 29445354 - 29445308
Alignment:
Q  122 aactgaaacaattcagtttagttcaaaacagttcagttcgattcgaa 168  Q
    |||||||||| ||  ||| ||||||||||||||||||||||||||||    
T  29445354 aactgaaacagttaggttcagttcaaaacagttcagttcgattcgaa 29445308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 19914466 - 19914422
Alignment:
Q  249 caaaggtatcaataataacaattcagttcggtttgaaacagttca 293  Q
    |||||||||||||||||| | ||||||| ||||||||| ||||||    
T  19914466 caaaggtatcaataataatagttcagtttggtttgaaatagttca 19914422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 22921070 - 22921030
Alignment:
Q  99 tgaaccattactaacagttctgaaactgaaacaattcagtt 139  Q
    |||||||||| ||||||||||||||||||  ||||||||||    
T  22921070 tgaaccattattaacagttctgaaactgattcaattcagtt 22921030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 39797409 - 39797449
Alignment:
Q  253 ggtatcaataataacaattcagttcggtttgaaacagttca 293  Q
    |||| ||||||||||| ||| ||||||||||||||||||||    
T  39797409 ggtaccaataataacagttcggttcggtttgaaacagttca 39797449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 55216628 - 55216707
Alignment:
Q  99 tgaaccattactaacagttctgaaactgaa-----acaattcagtttagttcaaaacagttcagttcgattcgaaacagt 173  Q
    ||||||||||||||||||||||||||||||     ||| ||||||| ||||||||| |||||||||||||||||||||||    
T  55216628 tgaaccattactaacagttctgaaactgaactgaaacagttcagttcagttcaaaatagttcagttcgattcgaaacagt 55216707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 41265024 - 41264960
Alignment:
Q  122 aactgaaacaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggttcagttca 186  Q
    |||||||||| |||| || |||| |||||||||||| ||||||| |||||||||||||| |||||    
T  41265024 aactgaaacagttcaattcagtttaaaacagttcagctcgattcaaaacagtttggttcggttca 41264960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 8473119 - 8473151
Alignment:
Q  96 aactgaaccattactaacagttctgaaactgaa 128  Q
    |||||||||||||||||||||||||||||||||    
T  8473119 aactgaaccattactaacagttctgaaactgaa 8473151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 26661866 - 26661949
Alignment:
Q  96 aactgaaccattactaacagttctgaaactgaa-----acaattcagtttagttcaaaacagttcagttcgattcgaaacagtt 174  Q
    ||||||||||||| ||||||||  |||||||||     ||||||||||| ||||||||| |||| |||||||||  ||||||||    
T  26661866 aactgaaccattattaacagtttggaaactgaacagaaacaattcagttcagttcaaaatagtttagttcgatttaaaacagtt 26661949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 40654214 - 40654169
Alignment:
Q  249 caaaggtatcaataataacaattcagtt-cggtttgaaacagttca 293  Q
    |||||||||||||||||||| ||||||| || ||||||||||||||    
T  40654214 caaaggtatcaataataacagttcagttccgatttgaaacagttca 40654169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 29630007 - 29630039
Alignment:
Q  96 aactgaaccattactaacagttctgaaactgaa 128  Q
    |||||||||||||||||||||||| ||||||||    
T  29630007 aactgaaccattactaacagttctcaaactgaa 29630039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 33186242 - 33186286
Alignment:
Q  249 caaaggtatcaataataacaattcagttcggtttgaaacagttca 293  Q
    ||||||||||||||||||||||||||||  ||||| |||| ||||    
T  33186242 caaaggtatcaataataacaattcagtttagtttggaacaattca 33186286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 293
Target Start/End: Original strand, 33186278 - 33186306
Alignment:
Q  265 aacaattcagttcggtttgaaacagttca 293  Q
    |||||||||||||||||||||||||||||    
T  33186278 aacaattcagttcggtttgaaacagttca 33186306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 20678484 - 20678382
Alignment:
Q  96 aactgaaccattactaacagttctgaaactgaaacaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggttcagttcagctcggaac 195  Q
    |||||||||||||| || | ||||||||||||| |||   |||| ||||||||||||||||||| ||||||||| |||| ||||||  |||| |||||||    
T  20678484 aactgaaccattaccaataattctgaaactgaaccaaaatagttcagttcaaaacagttcagttggattcgaaatagttcggttca--tcagttcggaac 20678387  T
Q  196 agttc 200  Q
    |||||    
T  20678386 agttc 20678382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 19747363 - 19747456
Alignment:
Q  96 aactgaaccattactaacagttctgaaactga----aacaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggttcagttc 185  Q
    ||||||||||||||||||||||||||||||||    |||| |||||||  |||| |||||||||||||| |||| ||| ||||||||| |||||    
T  19747363 aactgaaccattactaacagttctgaaactgaactgaacagttcagttctgttcgaaacagttcagttctattcaaaatagtttggtttagttc 19747456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 19792443 - 19792350
Alignment:
Q  96 aactgaaccattactaacagttctgaaactga----aacaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggttcagttc 185  Q
    ||||||||||||||||||||||||||||||||    |||| |||||||  |||| |||||||||||||| |||| ||| ||||||||| |||||    
T  19792443 aactgaaccattactaacagttctgaaactgaactgaacagttcagttctgttcgaaacagttcagttctattcaaaatagtttggtttagttc 19792350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 224
Target Start/End: Complemental strand, 7672824 - 7672701
Alignment:
Q  99 tgaaccattactaacagttctgaaactgaa-----acaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggttcagttcagctcgga 193  Q
    ||||||||||||||||||| ||||||||||     ||||||||||| | ||||||| |||||||||||||  ||||||     ||||||||||| ||| |    
T  7672824 tgaaccattactaacagttgtgaaactgaactgaaacaattcagttcaattcaaaatagttcagttcgat--gaaaca-----gttcagttcagttcgaa 7672732  T
Q  194 acagttcagttcgatgactaaaattcaattt 224  Q
    ||||||||||| | | |||||||||||||||    
T  7672731 acagttcagtttggtaactaaaattcaattt 7672701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 42540431 - 42540348
Alignment:
Q  96 aactgaaccattactaacagttctgaaactg-----aaacaattcagtttagttcaaaacagttcagttcgattcgaaacagtt 174  Q
    |||||||||||||||||||||||||||||||     || |||||||||| | |||||||||||||||||||| | |||||||||    
T  42540431 aactgaaccattactaacagttctgaaactggactgaagcaattcagttcaattcaaaacagttcagttcgacttgaaacagtt 42540348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 43364185 - 43364229
Alignment:
Q  249 caaaggtatcaataataacaattcagttcggtttgaaacagttca 293  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||    
T  43364185 caaaggtatcaataataacagttcagttcggtttaaaacagttca 43364229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 43955440 - 43955515
Alignment:
Q  99 tgaaccattactaacagttctgaaactgaaacaattcagtttagttcaaaacagttcagttcgattcgaaacagtt 174  Q
    |||| ||||||||||| |||||||||||||||| |||  ||  |||||||||||||| |||| ||| |||||||||    
T  43955440 tgaatcattactaacaattctgaaactgaaacagttcgattcggttcaaaacagttcggttcaatttgaaacagtt 43955515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 8483770 - 8483692
Alignment:
Q  102 accattactaacagttctgaaactgaaacaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggttc 180  Q
    |||||| |||||| || || |||||||||||||| ||||||||||||||| |   ||| ||||| ||||||||||||||    
T  8483770 accattgctaacaattttggaactgaaacaattcggtttagttcaaaacaataaggtttgattccaaacagtttggttc 8483692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 3257628 - 3257691
Alignment:
Q  122 aactgaaacaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggttcagttc 185  Q
    |||||||||| ||| ||| | ||||||||||||||||||||||  |||| |||| |||||||||    
T  3257628 aactgaaacagttcggttcatttcaaaacagttcagttcgatttaaaaccgtttagttcagttc 3257691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 10382074 - 10382039
Alignment:
Q  139 ttagttcaaaacagttcagttcgattcgaaacagtt 174  Q
    ||||||||||||| ||||||||||||||||||||||    
T  10382074 ttagttcaaaacaattcagttcgattcgaaacagtt 10382039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 23780384 - 23780341
Alignment:
Q  250 aaaggtatcaataataacaattcagttcggtttgaaacagttca 293  Q
    ||||||||||||||||||||||| |||| ||| |||||||||||    
T  23780384 aaaggtatcaataataacaattcggttcagttcgaaacagttca 23780341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 10395256 - 10395342
Alignment:
Q  99 tgaaccattactaacagttctgaaactgaaacaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggttcagttc 185  Q
    ||||||||||||||||||| | ||||||||   |  ||||| ||| | |||||||||||||||||| ||||| |||  |||||||||    
T  10395256 tgaaccattactaacagttttcaaactgaactgaaacagttcagtcctaaacagttcagttcgatttgaaactgttcagttcagttc 10395342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 5993840 - 5993776
Alignment:
Q  122 aactgaaacaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggttcagttca 186  Q
    |||||||||| |||||||  ||||||||||||||| ||||||||||||||||| |||||||||||    
T  5993840 aactgaaacagttcagttcggttcaaaacagttcaattcgattcgaaacagttcggttcagttca 5993776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 45376668 - 45376571
Alignment:
Q  122 aactgaaacaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggttcagttcagctcggaacagttcagttcgatgactaaaattcaa 221  Q
    |||||| ||| ||||||| ||||||||||||||||||| |||||||||     | ||||| ||||| |||||||| |||||||   | ||||||||||||    
T  45376668 aactgatacagttcagttcagttcaaaacagttcagtttgattcgaaa-----tagttcaattcagttcggaacatttcagtttagtaactaaaattcaa 45376574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 285
Target Start/End: Complemental strand, 32567218 - 32567183
Alignment:
Q  250 aaaggtatcaataataacaattcagttcggtttgaa 285  Q
    ||||||||||||||||||| ||||||||||||||||    
T  32567218 aaaggtatcaataataacagttcagttcggtttgaa 32567183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 28924941 - 28924998
Alignment:
Q  128 aacaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggttcagttc 185  Q
    |||| |||||||  ||||||||||||||||| | |||||||| |||| ||||||||||    
T  28924941 aacagttcagttcggttcaaaacagttcagtcccattcgaaatagttcggttcagttc 28924998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 29321475 - 29321386
Alignment:
Q  96 aactgaaccattactaacagttctgaaactgaaacaattcagtttagttcaaaacagttcagttcgattcgaaacagtttggttcagttc 185  Q
    ||||||||| ||||||||| || ||||||||||   |  |||||  |||||||||||||  |||||||| ||| ||||| ||||||||||    
T  29321475 aactgaaccgttactaacaattttgaaactgaacagaaacagttcggttcaaaacagtttggttcgattagaaccagttcggttcagttc 29321386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 286
Target Start/End: Complemental strand, 11781711 - 11781680
Alignment:
Q  255 tatcaataataacaattcagttcggtttgaaa 286  Q
    ||||||||||||||||||||||||||||||||    
T  11781711 tatcaataataacaattcagttcggtttgaaa 11781680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 26099408 - 26099364
Alignment:
Q  249 caaaggtatcaataataacaattcagttcggtttgaaacagttca 293  Q
    |||| ||||||||||||||| |||||||| ||||| |||||||||    
T  26099408 caaatgtatcaataataacagttcagttcagtttgtaacagttca 26099364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 7345 - 7313
Alignment:
Q  142 gttcaaaacagttcagttcgattcgaaacagtt 174  Q
    |||| ||||||||||||||||||||||||||||    
T  7345 gttcgaaacagttcagttcgattcgaaacagtt 7313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 20587 - 20631
Alignment:
Q  141 agttcaaaacagttcagttcgattcgaaacagtttggttcagttc 185  Q
    |||||||||||||||||||| |||||||| ||||| |||| ||||    
T  20587 agttcaaaacagttcagttcaattcgaaatagtttagttccgttc 20631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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