View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9522_low_1 (Length: 705)
Name: NF9522_low_1
Description: NF9522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9522_low_1 |
 | |
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| [»] scaffold0187 (7 HSPs) |
| | |
|
| [»] scaffold0082 (1 HSPs) |
| | |
|
| [»] scaffold0094 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 175 - 692
Target Start/End: Original strand, 37881940 - 37882452
Alignment:
| Q |
175 |
tctctgatgtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt-aagtttattctttcttcatgtctataatt |
273 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37881940 |
tctctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataatctttcaagtttattctttcttcatgtctataatt |
37882039 |
T |
|
| Q |
274 |
taattctaatttagagaacagtgcaaagtattcggataaaatgttccactcgtaagttacnnnnnnnnnnnnnngctaaggaacttcagtaaagagatca |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37882040 |
taattctaatttagagaacagtgcaaagtattcggataaagtgttccactcgtaagttactttttttt------gctaaggaacttcagtaaagagatca |
37882133 |
T |
|
| Q |
374 |
tagttatcaaaacacagattgtggttgcgaacttgcagtggtggatgcagtcatgaccgctactattgtgattatgaacaatgtggctgttgtaatgtgt |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37882134 |
tagttatcaaaacacagattgtggttgcgaacttgcagtggtggatgcagtcatgaccgctactattgtgattatgaacaatgtggctgttgtaatgtgt |
37882233 |
T |
|
| Q |
474 |
actgcaacgtgaaatactatatctcctctcttcctccaaaatctcctgccatggggtcgacctgtaaacaaggtaaacccaatgggaaccaaaaacggga |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37882234 |
actgcaacgtgaaatactatatctcctctcctcttccaaaatctcctgccatggggtcgacctgtaaacaaggtaaacccaatgggaaccaaaaacggga |
37882333 |
T |
|
| Q |
574 |
gggtaccacattgacattggtcatggtcgagaagaaaaacggcgcacggaccgtactcgagctttggatcaatgtccccagaagcaaggagtacgcccgc |
673 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
37882334 |
gggtaccacattgacattggtcatggtagagaagaaaaacggcgcacggaccgtactcgagcttcggatcaatgtccccagaagcaaggagtacgcccgc |
37882433 |
T |
|
| Q |
674 |
gtgtttttaagagaacacc |
692 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
37882434 |
gtgtttttaagagaacacc |
37882452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 37881766 - 37881902
Alignment:
| Q |
1 |
tgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaatt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37881766 |
tgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaatt |
37881865 |
T |
|
| Q |
101 |
cactggcaagctcaacctgatcagtaggatacgaaca |
137 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||| |
|
|
| T |
37881866 |
cattgccaagctcaacctgatcagtaggatacgaaca |
37881902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 37855538 - 37855668
Alignment:
| Q |
1 |
tgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaatt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37855538 |
tgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaatt |
37855637 |
T |
|
| Q |
101 |
cactggcaagctcaacctgatcagtaggata |
131 |
Q |
| |
|
|| || ||||||||||||||||||||||||| |
|
|
| T |
37855638 |
cattgccaagctcaacctgatcagtaggata |
37855668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 37867726 - 37867856
Alignment:
| Q |
1 |
tgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaatt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37867726 |
tgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaatt |
37867825 |
T |
|
| Q |
101 |
cactggcaagctcaacctgatcagtaggata |
131 |
Q |
| |
|
|| || ||||||||||||||||||||||||| |
|
|
| T |
37867826 |
cattgccaagctcaacctgatcagtaggata |
37867856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 37911711 - 37911841
Alignment:
| Q |
1 |
tgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaatt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37911711 |
tgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaatt |
37911810 |
T |
|
| Q |
101 |
cactggcaagctcaacctgatcagtaggata |
131 |
Q |
| |
|
|| || ||||||||||||||||||||||||| |
|
|
| T |
37911811 |
cattgccaagctcaacctgatcagtaggata |
37911841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 37911890 - 37911958
Alignment:
| Q |
176 |
ctctgatgtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt |
244 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
37911890 |
ctctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataatcttt |
37911958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 120; Significance: 5e-61; HSPs: 7)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 6710 - 6571
Alignment:
| Q |
1 |
tgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaatt |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6710 |
tgaagatagaggaagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgaatttctgaatctcaaatt |
6611 |
T |
|
| Q |
101 |
cactggcaagctcaacctgatcagtaggatacgaacaatc |
140 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
6610 |
cattgccaagctcaacctgatcagtaggatacgaacaatc |
6571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 17038 - 16908
Alignment:
| Q |
1 |
tgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaatt |
100 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17038 |
tgaagatagaggaagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaatt |
16939 |
T |
|
| Q |
101 |
cactggcaagctcaacctgatcagtaggata |
131 |
Q |
| |
|
|| || ||||||||||||||||||||||||| |
|
|
| T |
16938 |
cattgccaagctcaacctgatcagtaggata |
16908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 27366 - 27236
Alignment:
| Q |
1 |
tgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaatt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27366 |
tgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaatt |
27267 |
T |
|
| Q |
101 |
cactggcaagctcaacctgatcagtaggata |
131 |
Q |
| |
|
|| || |||| |||||||||||||||||||| |
|
|
| T |
27266 |
cattgccaaggtcaacctgatcagtaggata |
27236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 176 - 267
Target Start/End: Complemental strand, 6533 - 6441
Alignment:
| Q |
176 |
ctctgatgtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt-aagtttattctttcttcatgtct |
267 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||| |||||| |||| |
|
|
| T |
6533 |
ctctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataacctttcaagtttattctctcttcacgtct |
6441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 414 - 464
Target Start/End: Complemental strand, 6314 - 6264
Alignment:
| Q |
414 |
gtggatgcagtcatgaccgctactattgtgattatgaacaatgtggctgtt |
464 |
Q |
| |
|
|||| |||| ||| |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
6314 |
gtggttgcaatcaagaccgctactattgtgattatgaacattgtggttgtt |
6264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 6424 - 6387
Alignment:
| Q |
269 |
taatttaattctaatttagagaacagtgcaaagtattc |
306 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
6424 |
taatttagttttaatttagagaacagtgcaaagtattc |
6387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 27170 - 27093
Alignment:
| Q |
192 |
tattgattatcatttgtgaactatgccaattaatg-taaatatgaataatcttt-aagtttattctttcttcatgtct |
267 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| | |||||||||||| ||| | ||||||||| |||| |||||| |
|
|
| T |
27170 |
tattgattatcatttgtaaactatgataattaatgtttaatatgaataatatttcatgtttattctctcttaatgtct |
27093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 593 - 692
Target Start/End: Complemental strand, 14862 - 14763
Alignment:
| Q |
593 |
gtcatggtcgagaagaaaaacggcgcacggaccgtactcgagctttggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaacacc |
692 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14862 |
gtcatggtagagaagaaaaacggcgcacggaccgtactcgagcttcggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaacacc |
14763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 523 - 593
Target Start/End: Complemental strand, 41903 - 41833
Alignment:
| Q |
523 |
catggggtcgacctgtaaacaaggtaaacccaatgggaaccaaaaacgggagggtaccacattgacattgg |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41903 |
catggggtcgacctgtaaacaaggtaaacccaatgggaaccaaaaacgggagggtaccacattgatattgg |
41833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 594 - 688
Target Start/End: Complemental strand, 17604618 - 17604524
Alignment:
| Q |
594 |
tcatggtcgagaagaaaaacggcgcacggaccgtactcgagctttggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaa |
688 |
Q |
| |
|
||||||| ||||||||||||||| || |||||||||||||||| |||||||||||||| |||||| ||||| ||||| |||||||||||||| |
|
|
| T |
17604618 |
tcatggtagagaagaaaaacggcacatagaccgtactcgagcttcagatcaatgtccccataagcaaagagtatgcccgattgtttttaagagaa |
17604524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 45759382 - 45759321
Alignment:
| Q |
17 |
tggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaa |
78 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| |
|
|
| T |
45759382 |
tggggggtagctgatcctgttattgacatgagagctacagcttttattgctcgatacaagaa |
45759321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 593 - 638
Target Start/End: Complemental strand, 51195835 - 51195790
Alignment:
| Q |
593 |
gtcatggtcgagaagaaaaacggcgcacggaccgtactcgagcttt |
638 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
51195835 |
gtcatggtagagaagaaaaaccgcgcacggaccgtactccagcttt |
51195790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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