View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9522_low_11 (Length: 227)
Name: NF9522_low_11
Description: NF9522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9522_low_11 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 4163673 - 4163881
Alignment:
| Q |
19 |
gctttattagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaactatcccaaattgttgatccagaattgatgtcacttagaatca |
118 |
Q |
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| T |
4163673 |
gctttattagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaactatcccaaattgttgatctagaattgatgtcacttagaatca |
4163772 |
T |
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| Q |
119 |
agtttcctacatcaacaagttgagctgtggaatttattgaatttggacttgaaatgcttgttgaccaaatgatgctaccattttctttgttcaatattac |
218 |
Q |
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| T |
4163773 |
agtttcctacatcaacaagttgagctgtggaatttattgaatttggacttgaaatgcttgttgaccaaatgatgctaccattttctttgttcaatattac |
4163872 |
T |
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| Q |
219 |
aagatttcc |
227 |
Q |
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| T |
4163873 |
aagatttcc |
4163881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 4134516 - 4134717
Alignment:
| Q |
20 |
ctttattagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaactatcccaaattgttgatccagaattgatgtcacttagaatcaa |
119 |
Q |
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| T |
4134516 |
ctttattagatgcaattttcatcgatggaacagctgaatctgcagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaa |
4134615 |
T |
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| Q |
120 |
gtttcctacatcaacaagttgagctgtggaatttattgaatttggacttgaaatgcttgttgaccaaatgatgctaccattttctttgttcaatattaca |
219 |
Q |
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| T |
4134616 |
gttccctgcatcatcaagtttagctgttgaatttgttgaa----ga--tgaaatgtttgttgaccaaatgatgataccatttggtttgttcaatattaca |
4134709 |
T |
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| Q |
220 |
agatttcc |
227 |
Q |
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| T |
4134710 |
agatttcc |
4134717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 4145318 - 4145519
Alignment:
| Q |
20 |
ctttattagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaactatcccaaattgttgatccagaattgatgtcacttagaatcaa |
119 |
Q |
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|||| |||||||||||| |||||| ||||||||| | ||| | |||||| |||||||||||||| ||||||| ||||||||||||||| ||||||||||| |
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| T |
4145318 |
ctttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaa |
4145417 |
T |
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| Q |
120 |
gtttcctacatcaacaagttgagctgtggaatttattgaatttggacttgaaatgcttgttgaccaaatgatgctaccattttctttgttcaatattaca |
219 |
Q |
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| T |
4145418 |
gttccctgcatcatcaagtttagctgttgaatttgttgaa----ga--tgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattaca |
4145511 |
T |
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| Q |
220 |
agatttcc |
227 |
Q |
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|||||||| |
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| T |
4145512 |
agatttcc |
4145519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 4123976 - 4124172
Alignment:
| Q |
25 |
ttagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaactatcccaaattgttgatccagaattgatgtcacttagaatcaagtttc |
124 |
Q |
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|||| |||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| ||||||| ||||||| |||| || || | ||||||||||| |
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| T |
4123976 |
ttagctgcaattctcattgttggaacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttc |
4124075 |
T |
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| Q |
125 |
ctacatcaacaagttgagctgtggaatttattgaatttggacttgaaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatt |
224 |
Q |
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| T |
4124076 |
ctgaatcagcaagttgagctgttgaatttgttgaa----ga--tgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatt |
4124169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 4153326 - 4153460
Alignment:
| Q |
25 |
ttagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaactatcccaaattgttgatccagaattgatgtcacttagaatcaagtttc |
124 |
Q |
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|||| |||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| ||||||| ||| ||| |||| || || | ||||||||||| |
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| T |
4153326 |
ttagctgcaattctcattgttggaacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccggaactgatatctctcaaaatcaagtttc |
4153425 |
T |
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| Q |
125 |
ctacatcaacaagttgagctgtggaatttattgaa |
159 |
Q |
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| T |
4153426 |
ctgaatcagcaagttgagctgttgaatttgttgaa |
4153460 |
T |
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