View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9522_low_3 (Length: 537)
Name: NF9522_low_3
Description: NF9522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9522_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Complemental strand, 7723994 - 7723485
Alignment:
| Q |
18 |
atatttttcatgaacgaggcttgttctatcagagtctccaagagagaaatggaatgccattttcagaatcatgattggtttcatcaatgaaacggaactc |
117 |
Q |
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| T |
7723994 |
atatttttcatgaacgaggcttgttctatcagagtctccaagagagaaatggaatgccattttcagaatcatgattggtttcatcaatgaaacggaactc |
7723895 |
T |
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| Q |
118 |
gttagtcattgctggagagaaacactgcatcttctggttctgtggttgtacgtaccatgagttgttgttg---ttgtgatggtggtggtggttatacatc |
214 |
Q |
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| T |
7723894 |
gttagtaattgccggagagaaacactgcatcttctggttctgtggttgtacgtaccatgagttgttgttgttgttgtgatggtggtggtggttatacatc |
7723795 |
T |
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| Q |
215 |
gaagctgactccattacgccaatagatggcgctgtcgctgtgccggcggcagaagttgctcttctctcttccttcttgaatctgatcccacatgcattgc |
314 |
Q |
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| T |
7723794 |
gaagctgactccattacgccaatagatggcgctgtcgctgtgccagcggcagaagttgctcttctctcttccttcttgaatctgatcccacatgcattgc |
7723695 |
T |
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| Q |
315 |
atagtgactgtaattcccattcaaattgaaactatcaaaagattgaaataaagttatatatttggaatgtatatatttagagtannnnnnnnacctttgg |
414 |
Q |
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| T |
7723694 |
ataatgactgtaatt-ccattcaaattgaaactatcaaaagattgaaataaagttatata-tagttatat-tatatttagagtattttttttacctttgg |
7723598 |
T |
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| Q |
415 |
gcctcgagggccgttcctccaaagcggtgtggaggtggtgtcacagtttgcacatctacgagcaagaagagaatcattgttgttattattggtacttgca |
514 |
Q |
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| T |
7723597 |
gcctcgagggccgttcctccaaagcggtgtggaggtggtgtcacagtttgcacatctacgagcaagaagagaatcattgttgttattattggtacttgca |
7723498 |
T |
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| Q |
515 |
cgtgttgcctttg |
527 |
Q |
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| T |
7723497 |
cgtgttgcctttg |
7723485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 32956020 - 32956086
Alignment:
| Q |
272 |
gctcttctctcttccttcttgaatctgatcccacatgcattgcatagtgactgtaattcccattcaa |
338 |
Q |
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| T |
32956020 |
gctcttctctcttccttcttgtatctaatcccacaagcattgcatagtgactgcaatttcaattcaa |
32956086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 407 - 495
Target Start/End: Original strand, 32956322 - 32956410
Alignment:
| Q |
407 |
acctttgggcctcgagggccgttcctccaaagcggtgtggaggtggtgtcacagtttgcacatctacgagcaagaagagaatcattgtt |
495 |
Q |
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| T |
32956322 |
accttagggccacgaggaccattcctccaaaggggtgtagaagtggagtcacagctagcacaacgacgagcaagaagagaatcattgtt |
32956410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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