View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9523_high_6 (Length: 301)
Name: NF9523_high_6
Description: NF9523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9523_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 24566406 - 24566246
Alignment:
| Q |
18 |
gattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatg |
117 |
Q |
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| T |
24566406 |
gattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatg |
24566307 |
T |
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| Q |
118 |
caatagtctttcttatcaagcatgtatcacgagtgtagaagactatactgatcattgggtt |
178 |
Q |
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| T |
24566306 |
caatagtctttcttatcaagcatgtatcacgagtgtagaagactatactgatcattgggtt |
24566246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 191 - 291
Target Start/End: Complemental strand, 24565336 - 24565242
Alignment:
| Q |
191 |
cttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattatcgttatatattttctaatttatgat |
290 |
Q |
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| T |
24565336 |
cttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaa------ttatatattttctaatttatgat |
24565243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 45532562 - 45532795
Alignment:
| Q |
18 |
gattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatg |
117 |
Q |
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| T |
45532562 |
gattggatatgtattttaaaaaattatttataatttgagaatgagaaaggtaaacaattgaactaaaaaagtttctctgtgatgaaatgcttctttcatg |
45532661 |
T |
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| Q |
118 |
ca--atagtctttcttatcaagcatgtatcacgagtgtagaagactatactgatcattgggttataatatgaccacttataattcaaaatagaaaaatat |
215 |
Q |
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| T |
45532662 |
tattagagactttcatatcaagcatgtatcacgaatgtagaa----atactcatcattgggttataatatgaccaattataattcaaaat---aaaaaat |
45532754 |
T |
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| Q |
216 |
tataagtttttattcttcaagatattacttttttaagattt |
256 |
Q |
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| T |
45532755 |
ttgaagtttttattcttaaagatattacattttaaagattt |
45532795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 23 - 265
Target Start/End: Complemental strand, 44339636 - 44339384
Alignment:
| Q |
23 |
gatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaata |
122 |
Q |
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| T |
44339636 |
gatggatatttgcaaaaactacttacagtttgagaataagaaagataaacaattgtactaaaaaagcttctttgtgattaaatgcttctttcatgcaata |
44339537 |
T |
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| Q |
123 |
g----tctttcttatcaagc--atgtatcacgagtgtag-------aagactatactgatcattgggttataatatgaccacttataattcaaaatagaa |
209 |
Q |
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| T |
44339536 |
gagacactttgatatcaaacatatatatcacgagtttagaagactcaagactacactcatcattgagttataatatgaccaattataattcaaagtataa |
44339437 |
T |
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| Q |
210 |
aaatattataagtttttattcttcaagatattacttttttaagatttgacaattat |
265 |
Q |
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| T |
44339436 |
a---attagcagtttttattcttcatgatatttctttttttagatttgacaattat |
44339384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 44335337 - 44335431
Alignment:
| Q |
29 |
tatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatag |
123 |
Q |
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| T |
44335337 |
tatttgcaaaaactacttacagtttgagaataagaaagataaacaattgtactaaaaaagcttctttgtgattaaatgcttctttcatgcaatag |
44335431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 265
Target Start/End: Original strand, 44335504 - 44335590
Alignment:
| Q |
176 |
gttataatatgaccacttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattat |
265 |
Q |
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| T |
44335504 |
gttataatattaccagttataattcaaagtataaaa---ttagcagtttttattcttcatgatatttctttttttagatttgacaattat |
44335590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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