View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9523_low_13 (Length: 334)
Name: NF9523_low_13
Description: NF9523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9523_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 37360369 - 37360698
Alignment:
| Q |
1 |
gaccttttcttgcgatatcacagggtgctgcttatcaagaatctggtcgagtatggcatgcaaaagacatagcaatccaagaaaggcgttgtggatggat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37360369 |
gaccttttcttgcgatatcacagggtgctgcttatcaagaatctggtcgagtatggcatgcaaaagacatagcaatccaagaaaggcgttgtggatggat |
37360468 |
T |
|
| Q |
101 |
gacaaatggtttcatgagtgtaaatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatgctgcttggggtgttgatcttggt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37360469 |
gacaaatggtttcatgagtgtaaatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatgctgcttggggtgttgatcttggt |
37360568 |
T |
|
| Q |
201 |
actcgcacaactaactaactgtctcaacatttttatcatgttattgacaacaatcatgatgatttgaaatctataaagtatttatttgtaattgccttat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37360569 |
actcgcacaactaactaactgtctcaacatttttatcatgttattgacaacaatcatgatgatttgaaatctacaaagtatttatttgtaattgccttat |
37360668 |
T |
|
| Q |
301 |
catgttatatacacggttctgcctttgctt |
330 |
Q |
| |
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|||||||||||||||||||||||| ||||| |
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| T |
37360669 |
catgttatatacacggttctgcctatgctt |
37360698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 37367693 - 37367364
Alignment:
| Q |
1 |
gaccttttcttgcgatatcacagggtgctgcttatcaagaatctggtcgagtatggcatgcaaaagacatagcaatccaagaaaggcgttgtggatggat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37367693 |
gaccttttcttgcgatatcacagggtgctgcttatcaagaatcaggtcgagtatggcatgcaaaagacatagcaatccaagaaaggcgttgtggatggat |
37367594 |
T |
|
| Q |
101 |
gacaaatggtttcatgagtgtaaatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatgctgcttggggtgttgatcttggt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37367593 |
gacaaatggtttcatgagtgtaaatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatgctgcttggggtgttgatcttggt |
37367494 |
T |
|
| Q |
201 |
actcgcacaactaactaactgtctcaacatttttatcatgttattgacaacaatcatgatgatttgaaatctataaagtatttatttgtaattgccttat |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37367493 |
actcgcacaactaactaactgtctcaacatttttatcatgttattgacaacaatcatgatgatttgaaatctaaaaagtatttatttgtaattgccttat |
37367394 |
T |
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| Q |
301 |
catgttatatacacggttctgcctttgctt |
330 |
Q |
| |
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|||||||||||||||||||||||| ||||| |
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| T |
37367393 |
catgttatatacacggttctgcctatgctt |
37367364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 22 - 265
Target Start/End: Original strand, 37382546 - 37382789
Alignment:
| Q |
22 |
agggtgctgcttatcaagaatctggtcgagtatggcatgcaaaagacatagcaatccaagaaaggcgttgtggatggatgacaaatggtttcatgagtgt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| |
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| T |
37382546 |
agggtgctgcttatcaagaatctggtcgagtatggtatgcaaaagacatagcaatccaagaaaggcgttgtgcatggatgtctaatggtttcatgagtgt |
37382645 |
T |
|
| Q |
122 |
aaatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatgctgcttggggtgttgatcttggtactcgcacaactaactaactg |
221 |
Q |
| |
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|||||||| ||||||||| || | ||| ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |||| ||||||| |||| |
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| T |
37382646 |
aaatacaaagttaggagcaggaagagcttttttgagatctctttatgcacagtatgctgcttggggtgttgatcttggtactggcactactaacttactg |
37382745 |
T |
|
| Q |
222 |
tctcaacatttttatcatgttattgacaacaatcatgatgattt |
265 |
Q |
| |
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|| ||||||||||||||| | ||||||||||||||||||||||| |
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| T |
37382746 |
tcacaacatttttatcatatcattgacaacaatcatgatgattt |
37382789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 37375186 - 37375424
Alignment:
| Q |
1 |
gaccttttcttgcgatatcacagggtgctgcttatcaagaatctggtcgagtatggcatgcaaaagacatagcaatccaagaaaggcgttgtggatggat |
100 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
37375186 |
gaccttttcttgtgatatactagggtgctgcttatcaagaacttggtcgagtatggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggat |
37375285 |
T |
|
| Q |
101 |
gacaaatggtttcatgagtgtaaatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatgctgcttggggtgttgatcttggt |
200 |
Q |
| |
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| | ||||||||||||||||||||||||| ||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37375286 |
gtctaatggtttcatgagtgtaaatacaaggttaggagcagggagagcttttttgagatctcttcatgagcagtatgctgcttggggtgttgatcttggt |
37375385 |
T |
|
| Q |
201 |
actcgcacaactaactaactgtctcaacatttttatcat |
239 |
Q |
| |
|
||| |||| ||||||| |||||||||||||||||||||| |
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| T |
37375386 |
actggcactactaacttactgtctcaacatttttatcat |
37375424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 95 - 202
Target Start/End: Complemental strand, 37386450 - 37386342
Alignment:
| Q |
95 |
atggatgacaaatggtttcatgagtgtaaatacaacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatgctgctt-ggggtgttga |
193 |
Q |
| |
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||||||| ||| ||||||||||| |||||| |||||||||| || |||| ||| ||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
37386450 |
atggatgcaaaacggtttcatgagagtaaatgcaacgttaggtgcagggagagcttttttgagatccctttatgagcagtatgctgcttgggggtgttga |
37386351 |
T |
|
| Q |
194 |
tcttggtac |
202 |
Q |
| |
|
||||||||| |
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|
| T |
37386350 |
tcttggtac |
37386342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 29 - 202
Target Start/End: Complemental strand, 41230028 - 41229855
Alignment:
| Q |
29 |
tgcttatcaagaatctggtcgagtatggcatgcaaaagacatagcaatccaagaaaggcgttgtggatggatgacaaatggtttcatgagtgtaaataca |
128 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||| | |||| ||||||||||||| |||||||||||||||||| ||||| |
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| T |
41230028 |
tgcttatcaagaatctggtcgtgtgtggcatgcaaaagacatagcaatcccaaaaagagcttgtggatggatgcagaatggtttcatgagtgtagataca |
41229929 |
T |
|
| Q |
129 |
acgttaggagccgggaaagcatttttgagatcccttcatgagcagtatgctgcttggggtgttgatcttggtac |
202 |
Q |
| |
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|| ||||| || |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41229928 |
acattaggggcagggagagcgtttttgagatccctttatgagcagtatgctgcttggggtgttgatcttggtac |
41229855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 203
Target Start/End: Original strand, 39243756 - 39243922
Alignment:
| Q |
37 |
aagaatctggtcgagtatggcatgcaaaagacatagcaatccaagaaaggcgttgtggatggatgacaaatggtttcatgagtgtaaatacaacgttagg |
136 |
Q |
| |
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|||||||||| ||| | ||| ||||||||||||||| |||| |||||| |||||| |||||||| |||||||||||||||||||||| ||||| || |
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| T |
39243756 |
aagaatctggccgattgtggtatgcaaaagacatagggatccctgaaagggcttgtggctggatgactcatggtttcatgagtgtaaatactacgttggg |
39243855 |
T |
|
| Q |
137 |
agccgggaaagcatttttgagatcccttcatgagcagtatgctgcttggggtgttgatcttggtact |
203 |
Q |
| |
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|| || ||||| |||||||| |||||| ||| ||||||||||| |||||||||||| |||||||| |
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|
| T |
39243856 |
tgctggcaaagcctttttgaggtccctttatgtgcagtatgctgaatggggtgttgattttggtact |
39243922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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