View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9523_low_14 (Length: 333)
Name: NF9523_low_14
Description: NF9523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9523_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 30 - 321
Target Start/End: Complemental strand, 38097587 - 38097296
Alignment:
| Q |
30 |
tgtgctttatactatgagacgatccttagtaaaactttcatgctttacagaggcaccaatgcttggaaggtatttagaagtttctttcttaggttatgca |
129 |
Q |
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| T |
38097587 |
tgtgctttatactatgagacgatccttagtaaaactttcatgctttacagaggcaccaatgcttggaaggtatttagaagttcctttcttaggttatgca |
38097488 |
T |
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| Q |
130 |
cctcgtcgttcggattatgcatacttcatcactcaagtcaagagcaagatggctaaacacttatcgtttgctgggagcataactcactccaaatccatta |
229 |
Q |
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| T |
38097487 |
cctcgtcgttcggattatgcatacctcatcactcaagtcaagagcaagatggctaaacacttattgtttgctgggagcataactcactccaaatccatta |
38097388 |
T |
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| Q |
230 |
ttgaagctttgcctatttaccaatgatgacatcaattattcctaaatcttgtttgcaggagatccaaaagattgaaagagattttatctgtg |
321 |
Q |
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| T |
38097387 |
ttgaagctttgcctatttaccaatgatgacatcaattattcctaaatcttgtttgcaggaaatccaaaagattgaaagtgattttatctgtg |
38097296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 30 - 313
Target Start/End: Complemental strand, 38086931 - 38086645
Alignment:
| Q |
30 |
tgtgctttatactatgagacgatccttagtaaaactttcatgctttacagaggcaccaatgcttggaaggtatttagaagtttctttcttaggttatgca |
129 |
Q |
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| T |
38086931 |
tgtgccttatcctatgagacaacccttagtgaaactctcgggctttacaaaggtgccaatgctcacaaggtatttaggatttcctttgttaggttgtgta |
38086832 |
T |
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| Q |
130 |
cctcgtcgttcggattatgcatacttcatcactcaagtcaagagcaagatggctaaacacttatcgtttgctgggagcataactcactccaaatccatta |
229 |
Q |
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| T |
38086831 |
cctcgtcattcagattatgcatacctcatcgctcaagtcaagacctagatggctaatcacttatcctttgttgggagagtaactctctccaaagccatta |
38086732 |
T |
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| Q |
230 |
ttgaagctttgcctatttaccaatg---atgacatcaattattcctaaatcttgtttgcaggagatccaaaagattgaaagagattt |
313 |
Q |
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| T |
38086731 |
ctcaagctctacctatttaccaatgatgatgacatcagttattcctaaatgttgtctgcaagagatccaaaagattcaaagagattt |
38086645 |
T |
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