View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9523_low_18 (Length: 248)
Name: NF9523_low_18
Description: NF9523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9523_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 20421187 - 20421420
Alignment:
| Q |
1 |
ttgggtcaaaggggaatcaaaaactgggatttggg-tgaaaattgaagagttcccaagaggaaacaacgaagaacaggat-catgttctggtgtaacacg |
98 |
Q |
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| T |
20421187 |
ttggatcaaagggagatcaaaaacagggattttgaattaaaattggagagttcccgagagggaacaacgaagaacagggttcctgttatggtgtaacacg |
20421286 |
T |
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| Q |
99 |
ctaggcgagtcgagtcacatgacctggtttgttgagacgcctccctttccaatattctagcttattggagactctatccataatactagagaaatcctct |
198 |
Q |
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| T |
20421287 |
ctaggcaagtcgagtcacatgacctggtttgttgagaagcctccctttccaatattctagcttattggagactctatccataatactagagaaatcctct |
20421386 |
T |
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| Q |
199 |
ttcttgattctttcatggtgcatttggaagccaa |
232 |
Q |
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| T |
20421387 |
ttcttgattctttcatggtgcatttggaagccaa |
20421420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 11774380 - 11774457
Alignment:
| Q |
1 |
ttgggtcaaaggggaatcaaaaactgggattt-gggtgaaaattgaagagttcccaagaggaaacaacgaagaacagga |
78 |
Q |
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| T |
11774380 |
ttgggtcaaagggga-tcataaacgaggattttgggtgaaaattggagagttcccgagagggaacaaccaagaacagga |
11774457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2547429 - 2547505
Alignment:
| Q |
1 |
ttgggtcaaaggggaatcaaaaactgggattt-gggtgaaaattgaagagttcccaagaggaaacaacgaagaacagg |
77 |
Q |
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| T |
2547429 |
ttgggtcaaaggggatt-aaaaacaaggattttgggtgaaaattggagagttcccgagagggaacaaccaagaacagg |
2547505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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