View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9523_low_2 (Length: 603)
Name: NF9523_low_2
Description: NF9523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9523_low_2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 573; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 19 - 603
Target Start/End: Complemental strand, 7627398 - 7626814
Alignment:
| Q |
19 |
aaatcagtagtgaaagagacattaagattattccctccatcaccattactattaccaagagaaacaatagaaagttgtaacatagatggttatgagatta |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627398 |
aaatcagtagtgaaagagacattaagattattccctccatcaccattactattgccaagagaaacaatagaaagttgtaacatagatggttatgagatta |
7627299 |
T |
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| Q |
119 |
aaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatgatcctgaagagttttatcctgaaaggttcattataag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7627298 |
aaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatgaccctgaagagttttatcctgaaaggttcattataag |
7627199 |
T |
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| Q |
219 |
ttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcctgcaatgaacatgggagtggtcactgttgagctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627198 |
ttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcctgcaatgaacatgggagtggtcactgttgagctt |
7627099 |
T |
|
| Q |
319 |
acacttgctaatcttcttcactattttgactggaagctgcctcatggttttgacaaggaacaagtgttggatacacaagttaaaccaggaataactatgc |
418 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627098 |
acacttgctaatcttcttcactcttttgactggaagctgcctcatggttttgacaaggaacaagtgttggatacacaagttaaaccaggaataactatgc |
7626999 |
T |
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| Q |
419 |
ataagaaaattgatctttaccttgttcctaagaaaagaaaaccatagtttattgtactagtattgagtattgacaattatttctgttatgaaataaagat |
518 |
Q |
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| T |
7626998 |
ataagaaaattgatctttaccttgttcctaagaaaagaaaaccatagtttattgtactagtattgagtattgacaattatttctgttatgaaataaagat |
7626899 |
T |
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| Q |
519 |
ttgctttaagtggagaaatttgtgtcattgaaatctttttcatctctattatgcacaaccaaaatccactttgtacattatgatc |
603 |
Q |
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| T |
7626898 |
ttgctttaagtggagaaatttgtgtcattgaaatctttttcatctctattatgcacaaccaaaatccactttgtacattatgatc |
7626814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 7622847 - 7622401
Alignment:
| Q |
19 |
aaatcagtagtgaaagagacattaagattattccctccatcaccattactattaccaagagaaacaatagaaagttgtaacatagatggttatgagatta |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622847 |
aaatcagtagtgaaagagacattaagattattccctccatcaccattactattgccaagagaaacaatagaaagttgtaacatagatggttatgagatta |
7622748 |
T |
|
| Q |
119 |
aaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatgatcctgaagagttttatcctgaaaggttcattataag |
218 |
Q |
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| T |
7622747 |
aaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatgaccctgaagagttttatcctgaaaggttcattataag |
7622648 |
T |
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| Q |
219 |
ttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcctgcaatgaacatgggagtggtcactgttgagctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622647 |
ttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcctgcaatgaacatgggagtggtcactgttgagctt |
7622548 |
T |
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| Q |
319 |
acacttgctaatcttcttcactattttgactggaagctgcctcatggttttgacaaggaacaagtgttggatacacaagttaaaccaggaataactatgc |
418 |
Q |
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|||||||||||||||||||| | |||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7622547 |
acacttgctaatcttcttcaatcttttgattggaatctgcctcatggttttgacaaggaacaagtgctggatacacaagttaaaccaggaataactatgc |
7622448 |
T |
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| Q |
419 |
ataagaaaattgatctttaccttgttcctaagaaaagaaaaccatag |
465 |
Q |
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| T |
7622447 |
ataagaaaattgatcttcaccttgttcctatgaaaagaaaaacatag |
7622401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 23 - 465
Target Start/End: Complemental strand, 7634530 - 7634088
Alignment:
| Q |
23 |
cagtagtgaaagagacattaagattattccctccatcaccattactattaccaagagaaacaatagaaagttgtaacatagatggttatgagattaaacc |
122 |
Q |
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|||| |||||||||||| | |||||||| || ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7634530 |
cagtggtgaaagagacaatgagattatttccaccatcaccattactagtaccaagagaaacaatagaaaattgtaacatagatggttatgagattaaacc |
7634431 |
T |
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| Q |
123 |
aaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatgatcctgaagagttttatcctgaaaggttcattataagttca |
222 |
Q |
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||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||| |
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| T |
7634430 |
aaaaactttagtgtatgttaatgcatgggccataggaagggatcctgagaattggaaagaccctgaagagttttatcctgaaaggttcattatgagttca |
7634331 |
T |
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| Q |
223 |
gtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcctgcaatgaacatgggagtggtcactgttgagcttacac |
322 |
Q |
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||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7634330 |
gtggactttaaagggaaaaattttgagctaattccatttggaagtggaagaagaatgtgtcctgcaatgaacatgggagtggtcactgttgagcttacac |
7634231 |
T |
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| Q |
323 |
ttgctaatcttcttcactattttgactggaagctgcctcatggttttgacaaggaacaagtgttggatacacaagttaaaccaggaataactatgcataa |
422 |
Q |
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|||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
7634230 |
ttgctaatcttcttcactcttttgattggaagttgcctcatggttttgacaaggaacaagtgttggatacaaaagtgaaaccaggaataactatgcataa |
7634131 |
T |
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| Q |
423 |
gaaaattgatctttaccttgttcctaagaaaagaaaaccatag |
465 |
Q |
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|||||||||||||| |||| |||||| |||||||||||||||| |
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| T |
7634130 |
gaaaattgatctttgcctttttcctaggaaaagaaaaccatag |
7634088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 193 - 284
Target Start/End: Original strand, 22941495 - 22941586
Alignment:
| Q |
193 |
ttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcc |
284 |
Q |
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||||||||||||||||| ||| ||||| || |||| ||| || || ||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
22941495 |
ttttatcctgaaaggtttattgaaagttgtgtagattataagggaaataattttgagttcattccatttggtgctggaagaagaatgtgtcc |
22941586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 22916834 - 22916886
Alignment:
| Q |
232 |
aaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcc |
284 |
Q |
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||||| || ||||||||||| ||||| ||||| ||||| |||||||||||||| |
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| T |
22916834 |
aaaggtaataattttgagttcattccgtttggcagtggcagaagaatgtgtcc |
22916886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 22932253 - 22932201
Alignment:
| Q |
232 |
aaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcc |
284 |
Q |
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||||| || ||||||||||| ||||| ||||| ||||| |||||||||||||| |
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| T |
22932253 |
aaaggtaataattttgagttcattccgtttggcagtggcagaagaatgtgtcc |
22932201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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