View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9523_low_20 (Length: 243)

Name: NF9523_low_20
Description: NF9523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9523_low_20
NF9523_low_20
[»] chr7 (12 HSPs)
chr7 (31-242)||(8102832-8103043)
chr7 (19-243)||(8017193-8017417)
chr7 (31-239)||(39985814-39986022)
chr7 (31-110)||(10494166-10494245)
chr7 (33-161)||(17268185-17268313)
chr7 (26-100)||(7877520-7877594)
chr7 (34-170)||(6789749-6789885)
chr7 (26-161)||(8602220-8602355)
chr7 (26-119)||(8590926-8591019)
chr7 (26-110)||(3147569-3147653)
chr7 (26-74)||(8659696-8659744)
chr7 (34-110)||(17260538-17260614)
[»] chr4 (5 HSPs)
chr4 (28-158)||(54396672-54396802)
chr4 (31-203)||(23596377-23596549)
chr4 (31-203)||(23587525-23587697)
chr4 (22-111)||(35132744-35132833)
chr4 (46-170)||(30775489-30775613)
[»] chr2 (7 HSPs)
chr2 (31-239)||(17716485-17716687)
chr2 (26-173)||(16657304-16657451)
chr2 (31-110)||(12234986-12235065)
chr2 (23-100)||(7542533-7542610)
chr2 (33-109)||(17703843-17703919)
chr2 (33-74)||(17621745-17621786)
chr2 (33-74)||(17717748-17717789)
[»] chr6 (1 HSPs)
chr6 (46-173)||(11133228-11133355)
[»] chr1 (1 HSPs)
chr1 (26-100)||(4678345-4678419)
[»] chr3 (1 HSPs)
chr3 (165-226)||(28776805-28776866)
[»] chr5 (1 HSPs)
chr5 (165-226)||(19229769-19229830)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 31 - 242
Target Start/End: Complemental strand, 8103043 - 8102832
Alignment:
Q  31 aagaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctggtttgaatgttttgagaatta 130  Q
    |||||||| || || |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8103043 aagaatgccgtcgtcactgtccctgcttacttcaatgattctcagcgtcaagcaactaaagatgctggtgttatcgctggtttaaatgttttgagaatta 8102944  T
Q  131 ttaacgagccaactgctgctgctattgcatacggtcttgacaaaaaggcgacaagtgttggtgagaagaacgtgttgatctttgatttgggaggtgggac 230  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  8102943 ttaatgagccaactgctgctgctattgcctacggtcttgacaaaaaggcgacaagtgttggtgagaagaacgtgttgatctttgatttgggtggtggtac 8102844  T
Q  231 ttttgatgtgtc 242  Q
    ||||||||||||    
T  8102843 ttttgatgtgtc 8102832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 8017193 - 8017417
Alignment:
Q  19 ggttcaactgtgaagaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctggtttgaatg 118  Q
    |||||||||||||||||||| |||||||| || || ||||||||||| ||||| || |||||||| || || ||||| ||||| || || ||  | ||||    
T  8017193 ggttcaactgtgaagaatgccgttgttacagttccagcttacttcaatgattcgcagcgtcaagccacaaaggatgccggtgtcattgcaggactcaatg 8017292  T
Q  119 ttttgagaattattaacgagccaactgctgctgctattgcatacggtcttgacaaaaaggcgacaagtgttggtgagaagaacgtgttgatctttgattt 218  Q
    ||||||||||||| ||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||| ||    
T  8017293 ttttgagaattatcaacgagccaacagctgcagctattgcgtacggacttgacaaaaaggctacaagtgttggcgagaagaatgtgttgatctttgactt 8017392  T
Q  219 gggaggtgggacttttgatgtgtct 243  Q
    ||||||||| |||||||||||||||    
T  8017393 gggaggtggtacttttgatgtgtct 8017417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 239
Target Start/End: Complemental strand, 39986022 - 39985814
Alignment:
Q  31 aagaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctggtttgaatgttttgagaatta 130  Q
    |||||||||||||||||||||||||||||||| || || || || |||||||| || || |||||||| ||||| || ||| | |||||  || ||||||    
T  39986022 aagaatgctgttgttactgtccctgcttactttaatgactcccagcgtcaagctaccaaggatgctggagttattgccggtcttaatgtcatgcgaatta 39985923  T
Q  131 ttaacgagccaactgctgctgctattgcatacggtcttgacaaaaaggcgacaagtgttggtgagaagaacgtgttgatctttgatttgggaggtgggac 230  Q
    | || ||||| ||||||||||| ||||| || ||||||||||| || || || |||||||| |||||||| || |||||||||||  | || ||||| ||    
T  39985922 tcaatgagcccactgctgctgccattgcttatggtcttgacaagaaagcaaccagtgttggagagaagaatgtcttgatctttgaccttggtggtggtac 39985823  T
Q  231 ttttgatgt 239  Q
    |||||||||    
T  39985822 ttttgatgt 39985814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 10494166 - 10494245
Alignment:
Q  31 aagaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctgg 110  Q
    |||||||||||||||||||| || |||||||||||||||||||||||  | || ||||  |||||||||| ||| |||||    
T  10494166 aagaatgctgttgttactgtgccggcttacttcaacgattctcaacgaaaggctactattgatgctggtgctattgctgg 10494245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 161
Target Start/End: Complemental strand, 17268313 - 17268185
Alignment:
Q  33 gaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctggtttgaatgttttgagaattatt 132  Q
    |||||||||  |||||||||| |||||||||||||||||||| ||  |||| || | |||||||||||| || |||||  | ||||| ||||   | ||     
T  17268313 gaatgctgtcattactgtcccggcttacttcaacgattctcagcgaaaagccaccatagatgctggtgtcattgctggccttaatgtattgaaggtaatc 17268214  T
Q  133 aacgagccaactgctgctgctattgcata 161  Q
    || || ||||||||||| |||||||||||    
T  17268213 aatgaaccaactgctgcagctattgcata 17268185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 7877520 - 7877594
Alignment:
Q  26 ctgtgaagaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtg 100  Q
    |||| |||||||| ||||||||||| || ||||| ||||| |||||||||||  |||| || |||||||||||||    
T  7877520 ctgtcaagaatgcagttgttactgtgccggcttatttcaatgattctcaacgaaaagccacaaaagatgctggtg 7877594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 170
Target Start/End: Complemental strand, 6789885 - 6789749
Alignment:
Q  34 aatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctggtttgaatgttttgagaattatta 133  Q
    ||||| ||| ||||||| |||||||| ||||| |||||||||||  |||| |||  |||||||||||  || |||||| | |||||| |  |||| || |    
T  6789885 aatgcagttattactgtgcctgcttatttcaatgattctcaacggaaagccactttagatgctggtgccattgctggtcttaatgttatacgaataatca 6789786  T
Q  134 acgagccaactgctgctgctattgcatacggtcttga 170  Q
    | || ||||| ||||||||| ||||||| || |||||    
T  6789785 atgaaccaacagctgctgctcttgcatatggccttga 6789749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 161
Target Start/End: Complemental strand, 8602355 - 8602220
Alignment:
Q  26 ctgtgaagaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctggtttgaatgttttgag 125  Q
    |||| |||||||| ||||||||||| || ||||| || || |||||||| ||  |||| || |||||||||||||  || |||||| | |||||  || |    
T  8602355 ctgtcaagaatgcagttgttactgtgccggcttattttaatgattctcagcgaaaagccacaaaagatgctggtgccattgctggtctcaatgtaatgcg 8602256  T
Q  126 aattattaacgagccaactgctgctgctattgcata 161  Q
     || || || ||||||||||| |||||| |||||||    
T  8602255 gataatcaatgagccaactgcagctgctcttgcata 8602220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 8591019 - 8590926
Alignment:
Q  26 ctgtgaagaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctggtttgaatgt 119  Q
    |||| |||||||| ||||||||||| || ||||| || || ||||||||  |  |||| || |||||||||||||| || ||||| ||||||||    
T  8591019 ctgtcaagaatgcagttgttactgtgccagcttattttaatgattctcagaggaaagctaccaaagatgctggtgtcattgctggcttgaatgt 8590926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 3147653 - 3147569
Alignment:
Q  26 ctgtgaagaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctgg 110  Q
    |||| |||||||| |||||||| || |||||||| ||||| ||| |||| ||  |||| || | ||||||||||||||| |||||    
T  3147653 ctgtcaagaatgcagttgttaccgtacctgcttatttcaatgatgctcagcggaaagcgacaatagatgctggtgttattgctgg 3147569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 8659744 - 8659696
Alignment:
Q  26 ctgtgaagaatgctgttgttactgtccctgcttacttcaacgattctca 74  Q
    |||||||||||||||||||||| || ||||| || ||||| ||||||||    
T  8659744 ctgtgaagaatgctgttgttacagtgcctgcatagttcaatgattctca 8659696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 17260614 - 17260538
Alignment:
Q  34 aatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctgg 110  Q
    |||| |||| ||||||| |||||||| ||||| |||||||| ||  |||| || | ||||||||||||||| |||||    
T  17260614 aatgttgttattactgttcctgcttatttcaatgattctcagcgaaaagccaccatagatgctggtgttattgctgg 17260538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 54396802 - 54396672
Alignment:
Q  28 gtgaagaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctggtttgaatgttttgagaa 127  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| || ||||||||||||| |||  | ||||||||||| ||||| |    
T  54396802 gtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgagga 54396703  T
Q  128 ttattaacgagccaactgctgctgctattgc 158  Q
    ||||||| ||||| ||||||||||| |||||    
T  54396702 ttattaatgagcctactgctgctgcaattgc 54396672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 23596377 - 23596549
Alignment:
Q  31 aagaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctggtttgaatgttttgagaatta 130  Q
    |||||||| ||||| || || ||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||  ||||  | |||||  |||||||||    
T  23596377 aagaatgccgttgtaaccgtgcctgcatacttcaacgattcacaacgtcaagctactaaggatgctggtgtcatttctggactcaatgtgatgagaatta 23596476  T
Q  131 ttaacgagccaactgctgctgctattgcatacggtcttgacaaaaaggcgacaagtgttggtgagaagaacgt 203  Q
    |||||||||| |||||||| |||||||| || |||||||| || || || ||||||  |||||||||||||||    
T  23596477 ttaacgagcccactgctgccgctattgcttatggtcttgataagaaagctacaagtactggtgagaagaacgt 23596549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 23587525 - 23587697
Alignment:
Q  31 aagaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctggtttgaatgttttgagaatta 130  Q
    |||||||| ||||| ||||| |||||||||||||||||||| ||||||||||| || |||||||| ||||| ||  ||||  | ||||| ||||||||||    
T  23587525 aagaatgccgttgtaactgtgcctgcttacttcaacgattcacaacgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaatta 23587624  T
Q  131 ttaacgagccaactgctgctgctattgcatacggtcttgacaaaaaggcgacaagtgttggtgagaagaacgt 203  Q
    |||| || || || |||||||||||||| || |||||||| || || || |||||    ||||||||||||||    
T  23587625 ttaatgaacctaccgctgctgctattgcttatggtcttgataagaaagctacaagcacgggtgagaagaacgt 23587697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 35132833 - 35132744
Alignment:
Q  22 tcaactgtgaagaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctggt 111  Q
    |||||||| |||||||| ||||||||||| |||||||| || |  |||||||||||  |||| |||| ||||||||||| ||| ||||||    
T  35132833 tcaactgttaagaatgcagttgttactgtgcctgcttattttagtgattctcaacgaaaagccactatagatgctggtgctattgctggt 35132744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 30775613 - 30775489
Alignment:
Q  46 actgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctggtttgaatgttttgagaattattaacgagccaactg 145  Q
    ||||| |||||||| ||||| ||| | || ||  |||| ||||  ||||||||||  || |||||| | |||||| ||||||| ||||| ||||| ||||    
T  30775613 actgtgcctgcttatttcaatgatgcacagcgaaaagccactatggatgctggtgccattgctggtcttaatgttatgagaataattaatgagcccactg 30775514  T
Q  146 ctgctgctattgcatacggtcttga 170  Q
    | || ||||||||||| || |||||    
T  30775513 cagcagctattgcatatggacttga 30775489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 239
Target Start/End: Original strand, 17716485 - 17716687
Alignment:
Q  31 aagaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctggtttgaatgttttgagaatta 130  Q
    |||||||| ||||||||||||||||||||||| ||   ||||||  | ||||| |||||  ||||||||| ||| |||||| | ||| |  |||||||||    
T  17716485 aagaatgccgttgttactgtccctgcttactttaatttttctcagagacaagctactaagcatgctggtgctattgctggtcttaatttcatgagaatta 17716584  T
Q  131 ttaacgagccaactgctgctgctattgcatacggtcttgacaaaaaggcgacaagtgttggtgagaagaacgtgttgatctttgatttgggaggtgggac 230  Q
    |||| ||||| |||||||| || ||||| || ||| ||||||      |||| || ||||| |||||||| || |||||||||||  | || ||||| ||    
T  17716585 ttaatgagcccactgctgcagccattgcttatggttttgaca------cgaccagcgttggagagaagaatgtcttgatctttgaccttggtggtggtac 17716678  T
Q  231 ttttgatgt 239  Q
    |||||||||    
T  17716679 ttttgatgt 17716687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 16657304 - 16657451
Alignment:
Q  26 ctgtgaagaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctggtttgaatgttttgag 125  Q
    |||| |||||||||||||||||||| || ||||||||||| ||||| || ||  |||| || | |||||||||||  ||||||||  | |||||  |  |    
T  16657304 ctgtcaagaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccatcgctggccttaatgtcattcg 16657403  T
Q  126 aattattaacgagccaactgctgctgctattgcatacggtcttgacaa 173  Q
    |||||| || || || |||||||| ||||||||||| |||||||||||    
T  16657404 aattatcaatgaacctactgctgcagctattgcatatggtcttgacaa 16657451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 12235065 - 12234986
Alignment:
Q  31 aagaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctgg 110  Q
    |||||||| |||||||| || |||||||| ||||| |||||||||||  ||||||||| |||||||||||| || |||||    
T  12235065 aagaatgcagttgttaccgtgcctgcttatttcaatgattctcaacgaaaagcaactatagatgctggtgtcattgctgg 12234986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 7542610 - 7542533
Alignment:
Q  23 caactgtgaagaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtg 100  Q
    ||||||||| |||||| ||||||||||| |||||||| || || |||||||||||  |||| |||| |||||| ||||    
T  7542610 caactgtgacgaatgcagttgttactgtacctgcttattttaatgattctcaacgaaaagccactatagatgcgggtg 7542533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 17703843 - 17703919
Alignment:
Q  33 gaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctg 109  Q
    ||||||||||||||||||||||| |||||| ||  |||||||  | ||||| ||||| ||||||| |||||| ||||    
T  17703843 gaatgctgttgttactgtccctgtttactttaataattctcagagacaagctactaaggatgctgctgttattgctg 17703919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 17621745 - 17621786
Alignment:
Q  33 gaatgctgttgttactgtccctgcttacttcaacgattctca 74  Q
    ||||||||||||||||||||||| |||||| || ||||||||    
T  17621745 gaatgctgttgttactgtccctgtttactttaatgattctca 17621786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 17717748 - 17717789
Alignment:
Q  33 gaatgctgttgttactgtccctgcttacttcaacgattctca 74  Q
    |||||| ||||||||||||||||||||||| || ||||||||    
T  17717748 gaatgccgttgttactgtccctgcttactttaatgattctca 17717789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 173
Target Start/End: Complemental strand, 11133355 - 11133228
Alignment:
Q  46 actgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtgttatcgctggtttgaatgttttgagaattattaacgagccaactg 145  Q
    ||||| ||||||||||| || || || ||||| ||||| |||| |||||| |||||||| || ||| | || ||| || |||| || |||||||| || |    
T  11133355 actgttcctgcttactttaatgactcgcaacgccaagctactagagatgcaggtgttattgcaggtctcaacgttatgcgaataatcaacgagcctacag 11133256  T
Q  146 ctgctgctattgcatacggtcttgacaa 173  Q
    | ||||| |||||||| |||||||||||    
T  11133255 cagctgcaattgcatatggtcttgacaa 11133228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 4678345 - 4678419
Alignment:
Q  26 ctgtgaagaatgctgttgttactgtccctgcttacttcaacgattctcaacgtcaagcaactaaagatgctggtg 100  Q
    ||||||||||||  ||||||||||| ||||| |||||||| |||||||||||  |||| || | |||||||||||    
T  4678345 ctgtgaagaatgtcgttgttactgtgcctgcatacttcaatgattctcaacgaaaagctaccatagatgctggtg 4678419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 28776866 - 28776805
Alignment:
Q  165 tcttgacaaaaaggcgacaagtgttggtgagaagaacgtgttgatctttgatttgggaggtg 226  Q
    |||| ||||||| | ||| ||| |||||||||||||  ||||||||||||||||||||||||    
T  28776866 tcttcacaaaaaagtgacgagtattggtgagaagaatttgttgatctttgatttgggaggtg 28776805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 19229769 - 19229830
Alignment:
Q  165 tcttgacaaaaaggcgacaagtgttggtgagaagaacgtgttgatctttgatttgggaggtg 226  Q
    |||| ||||||| | ||| ||| |||||||||||||  |||||||||||||| |||||||||    
T  19229769 tcttcacaaaaaagtgacgagtattggtgagaagaatttgttgatctttgatatgggaggtg 19229830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University