View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9523_low_22 (Length: 233)
Name: NF9523_low_22
Description: NF9523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9523_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 10693970 - 10693772
Alignment:
| Q |
20 |
accataaatgttgtgagtgttaatgtttataacatcatgggagtagtagaaaccaatcctttcttatcaaaacaagaaaccaatcctcttcattgtctta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10693970 |
accataaatgttgtgagtgttaatgtttataacatcatgggagtagtagaaaccaatcctttcttatcaaaacaagaaaccaatcctcttcattgtctta |
10693871 |
T |
|
| Q |
120 |
tggccttcacnnnnnnngtactccttggtttcctccaaatcagttatccagataaacccagtgcatttcaaatccatccaaagacaatgatactctctg |
218 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10693870 |
tggccttcactttctttgtactccttggtttcctccaaatcagttatccagataaacccagtgcatttcaaatccatccaaagacaatgatactctctg |
10693772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 10707692 - 10707568
Alignment:
| Q |
94 |
agaaaccaatcctcttcattgtcttatggccttcacnnnnnnngtactccttggtttcctccaaatcagttatccagataaacccagtgcatttcaaatc |
193 |
Q |
| |
|
||||||||| ||||| ||| | ||||||||||||| |||||||||| |||||||||||| | |||||||||||| |||| ||||||||||||| |
|
|
| T |
10707692 |
agaaaccaaccctctacatagccttatggccttcattttctttgtactccttgctttcctccaaattacttatccagataatcccactgcatttcaaatc |
10707593 |
T |
|
| Q |
194 |
catccaaagacaatgatactctctg |
218 |
Q |
| |
|
|||||||| ||||||||| |||||| |
|
|
| T |
10707592 |
catccaaaaacaatgataatctctg |
10707568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 10657723 - 10657649
Alignment:
| Q |
144 |
ttggtttcctccaaatcagttatccagataaacccagtgcatttcaaatccatccaaagacaatgatactctctg |
218 |
Q |
| |
|
|||||||||| ||||| ||||||||| |||| |||| |||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
10657723 |
ttggtttccttcaaattagttatccaaataatcccactgcatttcaagcccatccaaagacaatgctactctctg |
10657649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 10698440 - 10698374
Alignment:
| Q |
137 |
gtactccttggtttcctccaaatcagttatccagataaacccagtgcatttcaaatccatccaaaga |
203 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| || || | ||||||||||||||||||||| |
|
|
| T |
10698440 |
gtactccttggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaaga |
10698374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 10657800 - 10657772
Alignment:
| Q |
37 |
tgttaatgtttataacatcatgggagtag |
65 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10657800 |
tgttaatgtttataacatcatgggagtag |
10657772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 33777262 - 33777376
Alignment:
| Q |
94 |
agaaaccaatcctcttcattgtcttatggccttcacnnnnnnngtactccttggtttcctccaaatcagttatccagataaacccagtgcatttcaaatc |
193 |
Q |
| |
|
||||||||||||| ||||| | ||||||||||||| |||||| |||||||||| ||||| |||||||||||||| |||| ||||||||| || |
|
|
| T |
33777262 |
agaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccactgcatttcatgtc |
33777361 |
T |
|
| Q |
194 |
catccaaagacaatg |
208 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
33777362 |
catccaaagacaatg |
33777376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 33774667 - 33774736
Alignment:
| Q |
139 |
actccttggtttcctccaaatcagttatccagataaacccagtgcatttcaaatccatccaaagacaatg |
208 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
33774667 |
actcattggtttccttcaaattagttatccagataatcccactgcatttcatgtccatccaaagacaatg |
33774736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 15240335 - 15240406
Alignment:
| Q |
146 |
ggtttcctccaaatcagttatccagataaacccagtgcatttcaaatccatccaaagacaatgatactctct |
217 |
Q |
| |
|
||||| ||||||||| ||||||||||||| |||| | |||||| ||||||||||||||||| || ||||| |
|
|
| T |
15240335 |
ggttttctccaaatctgttatccagataatcccacagtctttcaactccatccaaagacaatgttagtctct |
15240406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University