View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9523_low_24 (Length: 229)
Name: NF9523_low_24
Description: NF9523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9523_low_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 38520186 - 38520406
Alignment:
| Q |
8 |
tatataggcttctcaacgatagaaaaactaagtggaacattccgtttcttatattcatgaagcataagatcagaaacccgtaaatcagcatgagggaata |
107 |
Q |
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| T |
38520186 |
tatataggcttctcaacgatagaaaaacta-gtggaacattccgtttcttatattcatgaagcataagatcagaaacccgtaaatcagcatgagggaata |
38520284 |
T |
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| Q |
108 |
tcccatcatgtgttgaaatgagtgaggaagcatccaatgaccaatttttcattccaaagataatcagtaaagttaattacatcttaaaacattagttatt |
207 |
Q |
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| T |
38520285 |
tcccatcatgttgtgaaatgagtgaggaagcatccaatgaccaatttttcattccaaagctaatcagtagagttaattacatcttaaaacattagttatt |
38520384 |
T |
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| Q |
208 |
accagattattttgaaactcaa |
229 |
Q |
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| T |
38520385 |
accagattattttgaaactcaa |
38520406 |
T |
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