View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9523_low_25 (Length: 217)

Name: NF9523_low_25
Description: NF9523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9523_low_25
NF9523_low_25
[»] chr7 (19 HSPs)
chr7 (15-202)||(21771968-21772155)
chr7 (15-202)||(21725903-21726090)
chr7 (34-202)||(21714209-21714377)
chr7 (15-202)||(21704650-21704837)
chr7 (15-202)||(21788236-21788423)
chr7 (15-202)||(21652076-21652263)
chr7 (32-202)||(21808119-21808289)
chr7 (32-202)||(21628149-21628319)
chr7 (15-158)||(21785413-21785556)
chr7 (32-166)||(21664122-21664256)
chr7 (57-160)||(21623242-21623345)
chr7 (15-160)||(21646750-21646895)
chr7 (38-199)||(21681680-21681841)
chr7 (15-166)||(21992180-21992340)
chr7 (32-202)||(15713647-15713817)
chr7 (32-158)||(21745556-21745682)
chr7 (56-202)||(21764110-21764256)
chr7 (15-160)||(21689420-21689565)
chr7 (15-160)||(21792018-21792163)
[»] scaffold0182 (1 HSPs)
scaffold0182 (68-168)||(25370-25470)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 21771968 - 21772155
Alignment:
Q  15 caaagggtgctaaagtctctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21771968 caaagggtgctaaagtctctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcataacacaaatc 21772067  T
Q  115 ttatattagcagagaagtacaaacttatgtgggcagcaaaatacatagaaaacaacggatacattccagaggatctacacaaaaagat 202  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21772068 tgatattagcagagaagtacaaacttatgtgggcagcaaaatacatagaaaataacggatacattccagaggatctacacaaaaagat 21772155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 21725903 - 21726090
Alignment:
Q  15 caaagggtgctaaagtctctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21725903 caaagggtgctaaagtctctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatc 21726002  T
Q  115 ttatattagcagagaagtacaaacttatgtgggcagcaaaatacatagaaaacaacggatacattccagaggatctacacaaaaagat 202  Q
    | |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  21726003 tgatattagcagagtagtacaaacttatgtgggcagcaaaatacatagaaaacaccggacacattccagaggatctacacaaaaagat 21726090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 34 - 202
Target Start/End: Original strand, 21714209 - 21714377
Alignment:
Q  34 tcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatcttatattagcagagaagta 133  Q
    |||||||||||| ||| ||||||||||||||||||||||||| ||||||| |||||||||| |||||| | ||  ||||||| |    || |||||||||    
T  21714209 tcagaaatagaacaaattttgagaagcattactcacccaagtttgtgtcattaggtcctatccatcatgacaatccaaatctgaagaaaggagagaagta 21714308  T
Q  134 caaacttatgtgggcagcaaaatacatagaaaacaacggatacattccagaggatctacacaaaaagat 202  Q
    ||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||    
T  21714309 caaacttatgtgggcagcaaaatacatagaaaacaccagacacattccagaggatctacacaaaaagat 21714377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 21704650 - 21704837
Alignment:
Q  15 caaagggtgctaaagtctctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatc 114  Q
    |||||||||| | ||| |||||||| |||||||||||||||| ||||||||||||||||||  ||||| ||||||||||| |||||| | ||  ||| ||    
T  21704650 caaagggtgcaagagtatctcagaagtagaaaaaactttgagcagcattactcacccaagttagtgtcgataggtcctatccatcatgacaatccaactc 21704749  T
Q  115 ttatattagcagagaagtacaaacttatgtgggcagcaaaatacatagaaaacaacggatacattccagaggatctacacaaaaagat 202  Q
    | |  |||| |||||||||||| ||||||||||||||||||||||||||||||| ||||   ||||||||||| ||||||||||||||    
T  21704750 tgaagttaggagagaagtacaagcttatgtgggcagcaaaatacatagaaaacaccggacttattccagaggaactacacaaaaagat 21704837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 21788236 - 21788423
Alignment:
Q  15 caaagggtgctaaagtctctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatc 114  Q
    |||||||||  | ||| |||||||||||||||||||||||||||||||||||| |||||||   ||||  |||||||||| |||||| | |||||||||     
T  21788236 caaagggtggcagagtatctcagaaatagaaaaaactttgagaagcattactcgcccaagttgttgtcggtaggtcctatccatcatgacaacacaaatt 21788335  T
Q  115 ttatattagcagagaagtacaaacttatgtgggcagcaaaatacatagaaaacaacggatacattccagaggatctacacaaaaagat 202  Q
    | |  |||| |||||||||||| ||||||||||||||||||||||| |||||||  ||| |||||||||||||||| |||||||||||    
T  21788336 tgaagttaggagagaagtacaagcttatgtgggcagcaaaatacatcgaaaacactggacacattccagaggatctgcacaaaaagat 21788423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 21652076 - 21652263
Alignment:
Q  15 caaagggtgctaaagtctctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatc 114  Q
    |||||||||| | ||| ||||||||||||||| || |||||||| |||||| | ||||||| ||| |||||||||||||| |||||| | || ||||||     
T  21652076 caaagggtgccacagtatctcagaaatagaaacaattttgagaaacattacacccccaagtttgtttcaataggtcctatccatcatgacaatacaaata 21652175  T
Q  115 ttatattagcagagaagtacaaacttatgtgggcagcaaaatacatagaaaacaacggatacattccagaggatctacacaaaaagat 202  Q
    | | |  || |||| |||| || ||||||||||||||||||||||||||||||||||| |  |||| |||||||| ||||||||||||    
T  21652176 tgaaaccaggagaggagtataagcttatgtgggcagcaaaatacatagaaaacaacggctttattctagaggatcgacacaaaaagat 21652263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 21808289 - 21808119
Alignment:
Q  32 tctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatcttatattagcagagaag 131  Q
    |||||||||||||| |||  ||||||||||||||||||||||||  || |||||||||||||| ||||||   || | |||||| |  |||| |||||||    
T  21808289 tctcagaaatagaacaaatcttgagaagcattactcacccaagttggtatcaataggtcctatccatcatggaaatataaatctgaagttaggagagaag 21808190  T
Q  132 tacaaacttatgtgggcagcaaaatacatagaaaacaacggatacattccagaggatctacacaaaaagat 202  Q
    ||||| ||||||||| | || |||||||||||||||| ||| |  |||| |||||||||||||||||||||    
T  21808189 tacaagcttatgtggtctgcgaaatacatagaaaacagcggctttattctagaggatctacacaaaaagat 21808119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 21628149 - 21628319
Alignment:
Q  32 tctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatcttatattagcagagaag 131  Q
    ||||||||||| |||| | |||| |||| ||||||||||||||| |||||||||||||||||| ||||||   |  |||||||| |   ||| |||||||    
T  21628149 tctcagaaataaaaaagattttgggaagtattactcacccaagtttgtgtcaataggtcctatccatcatggcagtacaaatctgaacataggagagaag 21628248  T
Q  132 tacaaacttatgtgggcagcaaaatacatagaaaacaacggatacattccagaggatctacacaaaaagat 202  Q
    ||||| ||| |||||||| ||||||||||||||||||  |||   ||||||||||| ||||||||||||||    
T  21628249 tacaagcttgtgtgggcatcaaaatacatagaaaacattggacttattccagaggaactacacaaaaagat 21628319  T

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Target: chr7; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 21785413 - 21785556
Alignment:
Q  15 caaagggtgctaaagtctctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatc 114  Q
    |||||||||| | ||| ||| |||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||| |||||| | ||  ||||||    
T  21785413 caaagggtgcaagagtatctaagaaataggaaaaactttgagaagcattactcacccaagttagtgtcaataggtcctatccatcatgacaatccaaatc 21785512  T
Q  115 ttatattagcagagaagtacaaacttatgtgggcagcaaaatac 158  Q
    | |    || |||||||||||| ||||||||||| |||||||||    
T  21785513 tgaagacaggagagaagtacaagcttatgtgggccgcaaaatac 21785556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 32 - 166
Target Start/End: Original strand, 21664122 - 21664256
Alignment:
Q  32 tctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatcttatattagcagagaag 131  Q
    ||||||||| |||||||||||||||||| |||||||||||||||   |||||||||||||||| ||||||   || ||| |||| |  |||| || ||||    
T  21664122 tctcagaaacagaaaaaactttgagaagtattactcacccaagttcctgtcaataggtcctatccatcatggcaatacagatctgaagttaggagggaag 21664221  T
Q  132 tacaaacttatgtgggcagcaaaatacatagaaaa 166  Q
    ||||| ||||||||||||||||||||||| |||||    
T  21664222 tacaagcttatgtgggcagcaaaatacattgaaaa 21664256  T

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Target: chr7; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 21623242 - 21623345
Alignment:
Q  57 aagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatcttatattagcagagaagtacaaacttatgtgggcagcaaaat 156  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||   || |||||||| |  |||| |||||||||||| |||||||||||||||||||    
T  21623242 aagcattactcacccaagttggtgtcaataggtcctatccatcatggcaatacaaatctgaagttaggagagaagtacaagcttatgtgggcagcaaaat 21623341  T
Q  157 acat 160  Q
    ||||    
T  21623342 acat 21623345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 21646750 - 21646895
Alignment:
Q  15 caaagggtgctaaagtctctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatc 114  Q
    |||||||||| | ||| |||||||||||||| ||| |||||| |||||||| | |||||||  ||||||||||||||||| |||||| | ||  |||| |    
T  21646750 caaagggtgccacagtatctcagaaatagaacaaaatttgaggagcattacacccccaagttggtgtcaataggtcctatccatcatgacaatccaaagc 21646849  T
Q  115 ttatattagcagagaagtacaaacttatgtgggcagcaaaatacat 160  Q
    | |   ||| |||||| ||||| |||||||||||||||||||||||    
T  21646850 tgaagataggagagaaatacaagcttatgtgggcagcaaaatacat 21646895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 38 - 199
Target Start/End: Original strand, 21681680 - 21681841
Alignment:
Q  38 aaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatcttatattagcagagaagtacaaa 137  Q
    |||||||| ||| ||| || ||||||||   ||||||| |||||||||||||||||| ||||||   || ||| |||| |  |||| ||||||||||||     
T  21681680 aaatagaacaaaatttaaggagcattacagccccaagtttgtgtcaataggtcctatccatcatggcaatacagatctaaagttaggagagaagtacaag 21681779  T
Q  138 cttatgtgggcagcaaaatacatagaaaacaacggatacattccagaggatctacacaaaaa 199  Q
    |||||||||||||||||||||||  ||||||  |||  ||||| | |||||||| |||||||    
T  21681780 cttatgtgggcagcaaaatacatcaaaaacactggaagcattcaaaaggatctatacaaaaa 21681841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 21992180 - 21992340
Alignment:
Q  15 caaagggtgctaaagtctctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcat--cagaaca---- 108  Q
    |||||||||  | ||| ||||| |||||||||| ||||||||||||| ||||||||||| |  ||||||||||||||||| ||||||  ||  |||        
T  21992180 caaagggtggcagagtatctcaaaaatagaaaagactttgagaagcactactcacccaaattggtgtcaataggtcctatccatcatggcaatacaagca 21992279  T
Q  109 ---caaatcttatattagcagagaagtacaaacttatgtgggcagcaaaatacatagaaaa 166  Q
       ||||||| |  |||| |||||||||||| |||| |||||||||||||||||| |||||    
T  21992280 atgcaaatctgaagttaggagagaagtacaagcttacgtgggcagcaaaatacatcgaaaa 21992340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 15713647 - 15713817
Alignment:
Q  32 tctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatcttatattagcagagaag 131  Q
    ||||||||| || ||||| | ||||| ||||||| |||| ||||  || |||||||| ||||| |||||| | || |||||||| |  | ||  ||||||    
T  15713647 tctcagaaaaagtaaaaattatgagatgcattacgcacctaagttggtttcaataggccctatccatcatgacaatacaaatctaaagtcaggggagaag 15713746  T
Q  132 tacaaacttatgtgggcagcaaaatacatagaaaacaacggatacattccagaggatctacacaaaaagat 202  Q
    ||||| ||||||||||| |||||||||||  ||||||  |||  ||||| |||||| || |||||||||||    
T  15713747 tacaagcttatgtgggcggcaaaatacatcaaaaacactggaagcattctagaggaactgcacaaaaagat 15713817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 158
Target Start/End: Original strand, 21745556 - 21745682
Alignment:
Q  32 tctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatcttatattagcagagaag 131  Q
    ||||| |||||||| ||| |||||||||||||||||||||||||  |||||| |||||||||| |||||| | ||  ||||||| |    || |||  ||    
T  21745556 tctcataaatagaacaaattttgagaagcattactcacccaagttggtgtcattaggtcctatccatcatgacaatccaaatctaaagacaggagaagag 21745655  T
Q  132 tacaaacttatgtgggcagcaaaatac 158  Q
    || || |||||||||||||||||||||    
T  21745656 tataagcttatgtgggcagcaaaatac 21745682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 202
Target Start/End: Original strand, 21764110 - 21764256
Alignment:
Q  56 gaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatcttatattagcagagaagtacaaacttatgtgggcagcaaaa 155  Q
    |||||| ||| |||||||||   |||||||||||||||| |||||| | |   || |||| |  |||| |||||||||||| |||| |||||||||| ||    
T  21764110 gaagcactacacacccaagttgttgtcaataggtcctatccatcatgacagatcagatctgaagttaggagagaagtacaagcttaagtgggcagcagaa 21764209  T
Q  156 tacatagaaaacaacggatacattccagaggatctacacaaaaagat 202  Q
    ||||||||||||| || |   | ||||||||| |||||| |||||||    
T  21764210 tacatagaaaacaccgcacttaatccagaggaactacaccaaaagat 21764256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 21689420 - 21689565
Alignment:
Q  15 caaagggtgctaaagtctctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatc 114  Q
    |||||||||| | ||| ||||||||||||| |||| ||||||||||||||  | || | ||   |||||| ||||||||| ||||||   || | |  ||    
T  21689420 caaagggtgcaagagtatctcagaaatagagaaaaatttgagaagcattagaccccgaggttgatgtcaaaaggtcctatccatcatggcaataaatctc 21689519  T
Q  115 ttatattagcagagaagtacaaacttatgtgggcagcaaaatacat 160  Q
    | |  |||| |||||||||||| |||||||||||||||||||||||    
T  21689520 taaagttaggagagaagtacaagcttatgtgggcagcaaaatacat 21689565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 21792018 - 21792163
Alignment:
Q  15 caaagggtgctaaagtctctcagaaatagaaaaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatc 114  Q
    |||||||||  | ||| ||||||||| ||| |||| |||||||||||||||   || | || ||| ||||||||||| || ||||||   |  ||| |||    
T  21792018 caaagggtggcagagtatctcagaaagagagaaaattttgagaagcattacatcccaaggtttgtatcaataggtcccatccatcatggcagtacagatc 21792117  T
Q  115 ttatattagcagagaagtacaaacttatgtgggcagcaaaatacat 160  Q
    |    |||| |||||||||||| ||||||||||||||| |||||||    
T  21792118 tggagttaggagagaagtacaagcttatgtgggcagcagaatacat 21792163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 168
Target Start/End: Original strand, 25370 - 25470
Alignment:
Q  68 acccaagtgtgtgtcaataggtcctattcatcatcagaacacaaatcttatattagcagagaagtacaaacttatgtgggcagcaaaatacatagaaaac 167  Q
    ||||||||  ||||||||||||||||| |||||| | || | |||||| |  |||| |||||||||||| |||| |||||||||| ||||||||||||||    
T  25370 acccaagttggtgtcaataggtcctatccatcatgacaataaaaatctgaagttaggagagaagtacaagcttaagtgggcagcagaatacatagaaaac 25469  T
Q  168 a 168  Q
    |    
T  25470 a 25470  T

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