View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9523_low_3 (Length: 506)
Name: NF9523_low_3
Description: NF9523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9523_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 52272872 - 52273304
Alignment:
| Q |
1 |
atactttcacggctcgaatgatctgcagcatcggtggaaccatcaatatgcagtgtgcttaaatcattctctgcagggcgtgtagctggtgtttcttcgg |
100 |
Q |
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| T |
52272872 |
atactttcacggctcgaatgatctgcagcatcggtggaaccatcaatatgcagtgtgcttaaatcattctctgcagggcgtgtagctggtgtttcttcgg |
52272971 |
T |
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| Q |
101 |
attcagcattttcaatcttattagttatctcttcactggggcgaggctcagaatcaatatccacatggaagccatcattgtcatgaaaagaaacattaga |
200 |
Q |
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| T |
52272972 |
attcagcattttcaatcttattagttatctcttcactagggcgaggatcagaatcaatatccacatggaagccatcattgtcatgaaaagaaacattaga |
52273071 |
T |
|
| Q |
201 |
tctgaaacccaacccaagtatccattagtgtttatctaaagtaaaaatatcccaattaagtgcatgctgaaacaaaatattgatgtaaacccacttactt |
300 |
Q |
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| T |
52273072 |
tctgaaacccaacccaagtatccattagtgtttatctaaagtaaaaatatcccaattaagtgcatgctgaaacaaaatattgatgtaaacccacttactt |
52273171 |
T |
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| Q |
301 |
ctttaaaaattctaatttcctctttcgaattttatccagtatagacgaaataggcttctgaaccagaggaacaggtttaaatgcagcatctcttgtttct |
400 |
Q |
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| T |
52273172 |
ctttaaaaattctaatttcctctttcgaattttatccagtatagacgaaataggcttctgaaccagaggaacaggtttaaatgcagcatctcttgtttct |
52273271 |
T |
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| Q |
401 |
aaacaaaacacattaaactatgtgagttattgg |
433 |
Q |
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| T |
52273272 |
aaacaaaacacattaaactatgtgagttattgg |
52273304 |
T |
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