View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9523_low_6 (Length: 492)
Name: NF9523_low_6
Description: NF9523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9523_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 196 - 475
Target Start/End: Original strand, 10383726 - 10384005
Alignment:
| Q |
196 |
tgtttttcttaatatgaattatctgggaaaacttgagaaccgtatcttcatcctatgcacttttgtggccacctcaaagccactatttctgttgcattgt |
295 |
Q |
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| T |
10383726 |
tgtttatcttaatatgaattctctgtgaaaacttgagagctgtatcttcatccaatgcacttctgtggccacctcaaagccactttttctgttgcattgt |
10383825 |
T |
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| Q |
296 |
tcttctgcgcgccatttcgaaaccggatccaatcttgtagaacaatcttcatgtcatgaactttgcttctgagatcttcacagcagttagcatggatggt |
395 |
Q |
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| T |
10383826 |
tcttctgcacgccatttcgaaaccggatccaatcttgtagaacaatcttcatgtcatgaactttgcttctgagatcttcacagcagttagcatggatggt |
10383925 |
T |
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| Q |
396 |
ataagctgtttcaaacatatgattatttacctgacaaaatccaccaaagtgatttgtatctatttcattaacaaagaagc |
475 |
Q |
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| T |
10383926 |
ataagctgtttcgaacatatgattatttacctgacaaaatccaccaaagtgatttgtatccatttcattaacaaagaagc |
10384005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 85 - 458
Target Start/End: Original strand, 10380403 - 10380802
Alignment:
| Q |
85 |
ctatcctataacaatgtaccaaaccatatgcttagcatttttcaccaaaacatggtttac-tttaa---------acttaaagataaatcttcctgctaa |
174 |
Q |
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| T |
10380403 |
ctatcctattacaaagtatcaaaccatatgcttagcatttttcaccaaaggatggtttacatttaattgagttgaactaaaagtgaaaccttcttgttca |
10380502 |
T |
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| Q |
175 |
gataaagagaaatctgtaatctgtttttcttaatatgaattatctgggaaaacttgagaaccgt----------------atcttcatcctatgcacttt |
258 |
Q |
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| T |
10380503 |
gataaaaagaaatctgcaagctgtttttcttaacatgaattgtctgtgaaaacttaagatctgtttgttcttctatgtatatcttcatcctatgcacttc |
10380602 |
T |
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| Q |
259 |
tgtggccacctcaaagccactatttctgttgcattgttcttctgcgcgccatttcgaaaccggatccaatcttgtagaacaatcttcatgtcatgaactt |
358 |
Q |
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| T |
10380603 |
tgtggccacctcaaagtcattttttctgttgcattgttgtttttcacacgttttctaaagcggatccaatcatctagaacaatcgtcatgtcatgaactt |
10380702 |
T |
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| Q |
359 |
tgcttctgagatcttcacagcagttagcatggatggtataagctgtttcaaacatatgattatttacctgacaaaatccaccaaagtgatttgtatctat |
458 |
Q |
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| T |
10380703 |
tgcttgtgagatcatcacaacagttagcatggatggtatacactgtttcaaacatatcgttattaagctgacagaatccgccaaactgatttctatctat |
10380802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 319 - 458
Target Start/End: Original strand, 17732283 - 17732427
Alignment:
| Q |
319 |
cggatccaatcttgtagaacaatcttcatgtcatgaactttgcttctgagatcttcacagcagttagcatggatggta-----taagctgtttcaaacat |
413 |
Q |
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| T |
17732283 |
cggatccaatcatttagaacaattgtcaagtcatgaactttgcttcggaggtcatcacagcagctagcatggatggtataaagtaaactctttcaaacat |
17732382 |
T |
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| Q |
414 |
atgattatttacctgacaaaatccaccaaagtgatttgtatctat |
458 |
Q |
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| T |
17732383 |
atcattattaggctgacagaatccgccaaactgatttgtatctat |
17732427 |
T |
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