View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9523_low_7 (Length: 451)
Name: NF9523_low_7
Description: NF9523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9523_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 28856813 - 28856376
Alignment:
| Q |
1 |
taatgtaaagaaacatcccctttgttatgatccgacctttctcaaaagatcagggtcagaaattccttgagcttgtagttgatctattgcagcagccttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28856813 |
taatgtaaagaaacatcccctttgttatgatcagacctttctcaaaagatcagggtcagaaattccttgagcttgtagttgatctattgcagcagccttt |
28856714 |
T |
|
| Q |
101 |
ccatgagcaatactttcaacccgaaaagtatggacaccatatatagactgtaaacaacctgaaaagaagtcataataaacatcataagaaccatgcacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28856713 |
ccatgagcaatactttcaacccgaaaagtatggacaccatatatagactgtaaacaacctgaaaagaagtcataataaacatcataagaaccatgcacaa |
28856614 |
T |
|
| Q |
201 |
taatctgaaaaagtgaggttttaaacaaaggatgttagcgtaggatgcaagaaaataatccagtaaggcctgcatcagtaccttgttcaataataatatc |
300 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28856613 |
taatctgaaaa-gtgaggttttaaacaaaggatgttagcgtaggatgcaagaaaataatccagtaaggcttgcatcagtaccttgttcaataataatatc |
28856515 |
T |
|
| Q |
301 |
aatcaccaaagaaagaggtaaacgcctctcaattgttatggtgccccaaaaaggtatatatgaaggccttgacaccttgaccaagggagaatggaaatta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28856514 |
aatcaccaaagaaagaggtaaacgcctctcaattgttatggtgccccaaaaaggtatatatgaaggccttgacaccttgaccaagggagaatggaaatta |
28856415 |
T |
|
| Q |
401 |
aaaaatcacttctcaatcaaactcgtaatacaacaccat |
439 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||| |
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| T |
28856414 |
aaaaatcacttctcaatcaaactcgcaatacaacaccat |
28856376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 17997046 - 17996610
Alignment:
| Q |
1 |
taatgtaaagaaacatcccctttgttatgatccgacctttctcaaaagatcagggtcagaaattccttgagcttgtagttgatctattgcagcagccttt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17997046 |
taatgtaaagaaacatcctctttgttatgatcagacctttctcaaaagatcagggtcagaaattccttgagcttgtagttgatctattgcagcagccttt |
17996947 |
T |
|
| Q |
101 |
ccatgagcaatactttcaacccgaaaagtatggacaccatatatagactgtaaacaacctgaaaagaagtcataataaacatcataagaaccatgcacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17996946 |
ccatgagcaatactttcaacccgaaaagtatggacaccatatatagactgtaaacaacctgaaaagaagtcataataaacatcataagaaccatgcacaa |
17996847 |
T |
|
| Q |
201 |
taatctgaaaaagtgaggttttaaacaaaggatgttagcgtaggatgcaagaaaataatccagtaaggcctgcatcagtaccttgttcaataataatatc |
300 |
Q |
| |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17996846 |
taatctgaaaa-gtgaggttttaaacaa-ggatgttagcgtaggatgcaagaaaataatctagtaaggcctgcatcagtaccttgttcaataataatatc |
17996749 |
T |
|
| Q |
301 |
aatcaccaaagaaagaggtaaacgcctctcaattgttatggtgccccaaaaaggtatatatgaaggccttgacaccttgaccaagggagaatggaaatta |
400 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17996748 |
aatcaccaaagaaagaggttaacgcctctcaattgttatggtgccccaaaaaggtatatatgaaggccttgacaccttgaccaagggagaatggaaatta |
17996649 |
T |
|
| Q |
401 |
aaaaatcacttctcaatcaaactcgtaatacaacaccat |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17996648 |
aaaaatcacttctcaatcaaactcgtaatacaacaccat |
17996610 |
T |
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