View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9523_low_8 (Length: 364)
Name: NF9523_low_8
Description: NF9523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9523_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 67 - 297
Target Start/End: Complemental strand, 40314957 - 40314727
Alignment:
| Q |
67 |
caatacatgggtaaaatagattcttgaatgagatacttattaggaacaatgtgactgtatagttgatatttgattgtacctttagatgcattacttattg |
166 |
Q |
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| T |
40314957 |
caatacatgggtaaaatagattcttgaatgagatacttattaggaacaatgtgactgtatagttgatatttgattgtacctttagatgcattacttattg |
40314858 |
T |
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| Q |
167 |
atagcacatgattgtactttatgcctcatggtctagaaattgaaagaactcattttaatatcgaaatgaaaataccaaggagaaaggacttccataaagc |
266 |
Q |
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| T |
40314857 |
atagcacatgattgtactttatgcctcatgctctagaaattgaaagaactcattttaatatcgaaatgaaaataccaaggagaaaggacttccataaagc |
40314758 |
T |
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| Q |
267 |
ggccaaatagcagcaagtacaatatttcttt |
297 |
Q |
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| T |
40314757 |
ggccaaatagcagcaagtacaatatttcttt |
40314727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 40315071 - 40315018
Alignment:
| Q |
1 |
acttaaggagcacgtcggcattcttctgttgttagagaaagtatcaaatgttgt |
54 |
Q |
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| T |
40315071 |
acttaaggagcacgtcggcattcttctgttgttagagaaagtatcaaatgttgt |
40315018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 349
Target Start/End: Complemental strand, 40314716 - 40314685
Alignment:
| Q |
318 |
cagcaagtacaactcaagaaatgcagcaatat |
349 |
Q |
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| T |
40314716 |
cagcaagtacaactcaagaaatgcagcaatat |
40314685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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