View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9524_low_1 (Length: 580)

Name: NF9524_low_1
Description: NF9524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9524_low_1
NF9524_low_1
[»] chr8 (3 HSPs)
chr8 (19-570)||(9408132-9408683)
chr8 (315-352)||(29410787-29410824)
chr8 (316-352)||(13358005-13358041)
[»] chr1 (1 HSPs)
chr1 (313-353)||(30927776-30927816)
[»] chr3 (3 HSPs)
chr3 (335-369)||(31138128-31138162)
chr3 (319-393)||(41223047-41223121)
chr3 (299-348)||(37319943-37319992)
[»] chr2 (2 HSPs)
chr2 (316-390)||(34346298-34346372)
chr2 (305-353)||(20612583-20612631)
[»] scaffold0024 (1 HSPs)
scaffold0024 (316-348)||(149409-149441)
[»] chr7 (1 HSPs)
chr7 (317-353)||(39230524-39230560)


Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 570
Target Start/End: Complemental strand, 9408683 - 9408132
Alignment:
Q  19 gtacgaacgtttggattcgtatacaggtgtaaaaatcccatatcactgtaccatacaaaagtgataatggaaagaaagnnnnnnnnnn--cattaaattt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||            ||||||||||    
T  9408683 gtacgaacgtttggattcgtatacaggtgtaaaaatcccatatcactgtaccatacaaaagtgataatagaaagaaagaaagaaaaaaaacattaaattt 9408584  T
Q  117 catgagggggttataagtacaaaagagataatagaaaagnnnnnnnnncattaaatttcacgaggggattataagtacaatggaaaaaacacgttttcta 216  Q
    |||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9408583 catgagggggttataagtacaaaagagataatagaaaagaaaaaaaaacattaaatttcacgaggggattataagtacaatggaaaaaacacgttttcta 9408484  T
Q  217 ttttgtaaagtaattcttaattaaccaagttgtatgagctccagtagtaaaaggaactcctttcaaagatgtagcgaatgcagaatttgattctcaagag 316  Q
    ||||||||||||||||||||||||||||||||  |||||||| ||||   |||||  ||||  |||| | ||||||||| | || ||||||||||| |||    
T  9408483 ttttgtaaagtaattcttaattaaccaagttgcttgagctccggtag--caaggagttcctaccaaaaacgtagcgaataccgagtttgattctcaggag 9408386  T
Q  317 ggaacaacgcttgaccaatgtgcatgcctctatgcataagtcatattaatcgtttacatttaatgggtcggaaatcgatccnnnnnnnnnnnnnntaaag 416  Q
    ||||||| | ||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||              |||||    
T  9408385 ggaacaatgtttggccaatgcgcatgcctctatgcatgagtcatattaatcgtttacatttaatgggtcggaaatcgatccaaaaacaaaaaaaataaag 9408286  T
Q  417 taattcttaatttacctttttcatataaactttatcacctttcttgattcatgtaaaatttgttaaagtgatgtatattttaagacgaatgaaataannn 516  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||       
T  9408285 taattcttaatttacctttttcatataaactttatcatctttctcgattcatgtaaaatttgttaaagtgatgtatattttaagatgaaggaaataattt 9408186  T
Q  517 nnnnnatgaactaaaaacgtggttaagcatcaaagtgaaatgtcgtgacctatg 570  Q
         ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9408185 tttttatgaactaaaaacgtggttaagcatcaaagtgaaatgccgtgacctatg 9408132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 29410824 - 29410787
Alignment:
Q  315 agggaacaacgcttgaccaatgtgcatgcctctatgca 352  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29410824 agggaacaacgcttgaccaatgtgcatgcctctatgca 29410787  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 13358041 - 13358005
Alignment:
Q  316 gggaacaacgcttgaccaatgtgcatgcctctatgca 352  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  13358041 gggaacaacgtttggccaatgtgcatgcctctatgca 13358005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 30927816 - 30927776
Alignment:
Q  313 agagggaacaacgcttgaccaatgtgcatgcctctatgcat 353  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  30927816 agagggaacaacgcttggccaatgtgcatgcctctacgcat 30927776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 369
Target Start/End: Complemental strand, 31138162 - 31138128
Alignment:
Q  335 tgtgcatgcctctatgcataagtcatattaatcgt 369  Q
    ||||||||||||||||||||||||| |||||||||    
T  31138162 tgtgcatgcctctatgcataagtcagattaatcgt 31138128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 393
Target Start/End: Complemental strand, 41223121 - 41223047
Alignment:
Q  319 aacaacgcttgaccaatgtgcatgcctctatgcataagtcatattaatcgtttacatttaatgggtcggaaatcg 393  Q
    ||||||| ||| |||||| ||||||||||| |||||||||  ||||||||  ||  |||||||| ||||||||||    
T  41223121 aacaacgtttggccaatgcgcatgcctctacgcataagtctgattaatcgcctatctttaatggatcggaaatcg 41223047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 37319992 - 37319943
Alignment:
Q  299 gaatttgattctcaagagggaacaacgcttgaccaatgtgcatgcctcta 348  Q
    |||||||||||||| || | ||||||||||||| | ||||||||||||||    
T  37319992 gaatttgattctcaggatgaaacaacgcttgacaagtgtgcatgcctcta 37319943  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 390
Target Start/End: Complemental strand, 34346372 - 34346298
Alignment:
Q  316 gggaacaacgcttgaccaatgtgcatgcctctatgcataagtcatattaatcgtttacatttaatgggtcggaaa 390  Q
    ||||||||| |||| ||| |||||||||||||| |||| ||||| |||||||| | || |||  |||||||||||    
T  34346372 gggaacaacacttggccagtgtgcatgcctctacgcatgagtcagattaatcgctcacctttggtgggtcggaaa 34346298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 353
Target Start/End: Complemental strand, 20612631 - 20612583
Alignment:
Q  305 gattctcaagagggaacaacgcttgaccaatgtgcatgcctctatgcat 353  Q
    |||||||| ||||||||||| |||| ||| || ||||||||||||||||    
T  20612631 gattctcaggagggaacaacacttggccagtgcgcatgcctctatgcat 20612583  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 348
Target Start/End: Original strand, 149409 - 149441
Alignment:
Q  316 gggaacaacgcttgaccaatgtgcatgcctcta 348  Q
    |||||||||||||||||| ||||||||||||||    
T  149409 gggaacaacgcttgaccagtgtgcatgcctcta 149441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 39230524 - 39230560
Alignment:
Q  317 ggaacaacgcttgaccaatgtgcatgcctctatgcat 353  Q
    |||||||| |||||| |||||||||||||||||||||    
T  39230524 ggaacaacacttgactaatgtgcatgcctctatgcat 39230560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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