View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9524_low_2 (Length: 555)
Name: NF9524_low_2
Description: NF9524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9524_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 23 - 503
Target Start/End: Original strand, 34136079 - 34136560
Alignment:
| Q |
23 |
aattcgaaagcctatatcaattcaatatttgaagatcaaacataatgaacggtaataactaaattttcttttattccgagataaaattcttacataatgc |
122 |
Q |
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| T |
34136079 |
aatttgaaggcctatatcaattcaatatttga-gatcaaacataatgaacggtaataactaaattttcttttattctgagataaaattcttacataatgc |
34136177 |
T |
|
| Q |
123 |
acactagtaatttcaatactagtaaatttgattgcagccactcactcatttcagaaacactgatcaatctttggttgtgta--tgagctaagtgatacat |
220 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34136178 |
acactagtaatttcaatactagcaaatttgattgcagccactcactcatttcagaaacactgatcaatctttggttgtgtaaatgagctaagtgatacat |
34136277 |
T |
|
| Q |
221 |
ttattaaactatctttctctactgtagcttataatgataaatttgaagattctcctcatcttgtttcttgaaattactgcgtaatctgtggacaaaaaac |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34136278 |
ttattaaactatctttctctactgtagcttataatgataaatttgaagattctcctcatcttgtttcttgaaattactgtgtaatctgtggacaaaaaac |
34136377 |
T |
|
| Q |
321 |
ttaccccatttatatggcttatattttggagagttttgcttatttgtaagctcctccaaaggcttgatttcagcatcatgtcctggattgaagaagaatg |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34136378 |
ttaccccatttatatggcttatattttggagagttttgcttatttgtaagctcctccaaaggcttgatttcagcatcatgtcctggattgaagaagaatg |
34136477 |
T |
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| Q |
421 |
gaatagaaaacctctctttctccttgttcaccattactctatgctccacactctcataggcatcattactccaaacctgcaac |
503 |
Q |
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| T |
34136478 |
gaatagaaaacctctctttctccttgttcaccattactctatgctccacactctcataggcatcattactccaaacctgcaac |
34136560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 38 - 499
Target Start/End: Original strand, 34139049 - 34139508
Alignment:
| Q |
38 |
atcaattcaatatttgaagatcaaacataatgaacggtaataactaaattttcttttattccgagataaaattcttacataatgcacactagtaatttca |
137 |
Q |
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||||| ||||| ||||| ||||||||||||||||||||| ||||| ||| ||||||||| |||||||| | | |||||||||||| | ||||||| | |
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| T |
34139049 |
atcaaatcaatttttga-gatcaaacataatgaacggtattaactttattgtcttttattatgagataaattgcatacataatgcaccc-agtaattcta |
34139146 |
T |
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| Q |
138 |
atactagtaaatttgattgcagccactcactcatttcagaaacactgatcaatctttggttgtgta--tgagctaagtgatacatttattaaactatctt |
235 |
Q |
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| T |
34139147 |
atac----aaatttgattgtagccagttgctcattttagaaacaccgatcaatctttggttgtttacatgagctaagtcatacatttattaaaatatctt |
34139242 |
T |
|
| Q |
236 |
tctctactgtagcttata--atgataaatttgaagattctcctcatcttgtttcttgaaattactgcgtaatctgtggacaaaaaacttaccccatttat |
333 |
Q |
| |
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|||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||| | ||| |||||| |||| ||||||||||||| |
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| T |
34139243 |
tctctaaggtagcttatataatgataaatttgaagattctcctcttcttgtttcttgaagttactgtttgttctatggacataaaatttaccccatttat |
34139342 |
T |
|
| Q |
334 |
atggcttatattttggagagttttgcttatttgtaagctcctccaaaggcttgatttcagcatcatgtcctggattgaagaagaatggaatagaaaacct |
433 |
Q |
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| T |
34139343 |
aaggcttatattttgaagggttttgctcgttaataagctcctccaaaggcttgatttcaatatcatatcctgggttgaaaaagaatggaatagaaaatct |
34139442 |
T |
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| Q |
434 |
ctctttctccttgttcaccattactctatgctccacactctcataggcatcattactccaaacctg |
499 |
Q |
| |
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||||||||||||||||||| | |||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
34139443 |
ttctttctccttgttcaccaatgctctgtgctccacactctcattggcatcattactccaaacctg |
34139508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 244 - 503
Target Start/End: Original strand, 34141933 - 34142192
Alignment:
| Q |
244 |
gtagcttataatgataaatttgaagattctcctcatcttgtttcttgaaattactgcgtaatctgtggacaaaaaacttaccccatttatatggcttata |
343 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| | |||||| |||| |||||| ||||||||||||||| |||| |
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| T |
34141933 |
gtagcttataatgataaatttgaagattctccacatcttgtttcttgatattgctgtcttttctgtgaacaagaaactttccccatttatatggcctata |
34142032 |
T |
|
| Q |
344 |
ttttggagagttttgcttatttgtaagctcctccaaaggcttgatttcagcatcatgtcctggattgaagaagaatggaatagaaaacctctctttctcc |
443 |
Q |
| |
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| T |
34142033 |
ttttgaagggttttgctcatttataagctcttcaaaaggtttgacttcagcgtcatatcctgggaataaaaagaagggaatagaaaacctttccttctct |
34142132 |
T |
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| Q |
444 |
ttgttcaccattactctatgctccacactctcataggcatcattactccaaacctgcaac |
503 |
Q |
| |
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|| |||| || |||| |||||||||||||||||||||||||| |||||||||| |||| |
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| T |
34142133 |
gtgctcacaatcgctctgtgctccacactctcataggcatcattgctccaaacctacaac |
34142192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 501
Target Start/End: Original strand, 34119456 - 34119543
Alignment:
| Q |
414 |
aagaatggaatagaaaacctctctttctccttgttcaccattactctatgctccacactctcataggcatcattactccaaacctgca |
501 |
Q |
| |
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||||| ||||| |||||||| || ||||| |||||||||||| || ||||| ||||||||||| |||||||| ||||||||||||| |
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| T |
34119456 |
aagaacggaatggaaaacctatccttctcagagttcaccattaccctgtgctctacactctcataagcatcattgctccaaacctgca |
34119543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 501
Target Start/End: Original strand, 34130619 - 34130872
Alignment:
| Q |
248 |
cttataatgataaatttgaagattctcctcatcttgtttcttgaaattactgcgtaatctgtggacaaaaaacttaccccatttatatggcttatatttt |
347 |
Q |
| |
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|||||||||||||||||||| |||||| | | || |||| |||||| || | ||||| ||||| |||||| ||||| || ||||| | |||||| |
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| T |
34130619 |
cttataatgataaatttgaatgttctccacctttttcttctcgaaattgctactctttctgttgacaagaaactttccccaattgtatggtctgtatttt |
34130718 |
T |
|
| Q |
348 |
ggagagttttgcttatttgtaagctcctccaaaggcttgatttcagcatcatgtcctggattgaagaagaatggaatagaaaacctctctttctccttgt |
447 |
Q |
| |
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|||| ||||| || |||||| |||||||| | ||| |||| | ||| || ||| | || ||| ||||| || || |||||||| |||||||| || |
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| T |
34130719 |
ggagggttttcctcatttgtcagctcctcgagaggtttgactacagtgtcgtgtgcagggaagaaaaagaaggggattgaaaacctttctttctcagagt |
34130818 |
T |
|
| Q |
448 |
tcaccattactctatgctccacactctcataggcatcattactccaaacctgca |
501 |
Q |
| |
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|
| T |
34130819 |
taaccatcactctgtgttccacactttcataagcatcattgctccaaacctgca |
34130872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 498
Target Start/End: Original strand, 34125669 - 34125741
Alignment:
| Q |
426 |
gaaaacctctctttctccttgttcaccattactctatgctccacactctcataggcatcattactccaaacct |
498 |
Q |
| |
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|||||||| |||||||| ||| || || |||||||| |||||||||||||| ||||||| |||||||||| |
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| T |
34125669 |
gaaaacctttctttctcaaagttgactataactctatgttccacactctcatactcatcattgctccaaacct |
34125741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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