View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9524_low_3 (Length: 511)
Name: NF9524_low_3
Description: NF9524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9524_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 260 - 507
Target Start/End: Complemental strand, 8869034 - 8868787
Alignment:
| Q |
260 |
ctaccattaatattctagtttgttttccaggaagatgccgagtcaagggatttttaaacttaataattcaaagctttgtgaaagactaaattgtgaatga |
359 |
Q |
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| T |
8869034 |
ctaccattaatattctagtttgttttccaggaagatgctgagtcaagggatttttaaacttaatgattcaaagctttgtcaaagactaaattgtgaatga |
8868935 |
T |
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| Q |
360 |
ccatgatatttagactaatgaaaatcaagttgagtgaagtaatatttaccacaagtttcgctccaaggtccccagaaactctggcaaaagcaaacgcatt |
459 |
Q |
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| T |
8868934 |
ccatgatctttaaactaatgaaaatcaagttgagtgaagtaatatttaccacaagtttcgctccaagttccccagaaactccggcaaaagcaaacgcatt |
8868835 |
T |
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| Q |
460 |
gaagcgtctcagttgaagcgtctaaggagcattgcgtactacctttgc |
507 |
Q |
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| T |
8868834 |
gaagcgtctcagttgaagtgtttaaggagcattgcgtactacctttgc |
8868787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 25 - 225
Target Start/End: Complemental strand, 8869237 - 8869033
Alignment:
| Q |
25 |
aatgaaaatcgtggttagcgcagactaacacatgatagtgaatgcatccataatattagctcaaacttttggtgctgggatcctattgaatga----ttg |
120 |
Q |
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| T |
8869237 |
aatgaaaatcgtggttagcgcagactaacacatgatagtgaatgcatccataatattagctcaaacttttggtgctgggatcctattgaatgaatgattg |
8869138 |
T |
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| Q |
121 |
ttgaggaattggaaaggctattttatcatgagtgatgagaattggcctactacttttgttatcactctggactgtctttggatgtccatcattcacggtc |
220 |
Q |
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| T |
8869137 |
ttgaggaattggaaaggctattttatcatgagtgatgagaattggcttactacttttgttatcactctggactgtctttggatggccatcattcacggtc |
8869038 |
T |
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| Q |
221 |
gagct |
225 |
Q |
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| T |
8869037 |
gagct |
8869033 |
T |
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