View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9524_low_5 (Length: 375)
Name: NF9524_low_5
Description: NF9524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9524_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 356
Target Start/End: Original strand, 24845660 - 24845993
Alignment:
| Q |
10 |
atgagatgaatataaaaccctgttgatcacaaaattattagatgaaacattcaacaataaatgagtttgtgtaacttaagcacatgtctcacttcatatt |
109 |
Q |
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| T |
24845660 |
atgagatgaatataaaaccctgttgatcacaaaattattagatgaaacattcaacaataaatgagtttgtgtaacttaagcacatgtctcacttcatatt |
24845759 |
T |
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| Q |
110 |
gatgacatgttagtatttgacacttcaaactcgatcggttctattttcttaaatcatcagtgtcagtgttgtgttaggtgtctgactatatcaatgtttc |
209 |
Q |
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| T |
24845760 |
gatgacatgttagtattcgacacttcaaactcgatcggttctattttcttaaatcatcagtgtcggtgttgtgttaggtgtctggct------------- |
24845846 |
T |
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| Q |
210 |
ataacatgtacggaaaattcagagagggagaaagacctcttctgtacgactaatggcaaagccgagctttgtatcttcctctctaagtttgatctctatt |
309 |
Q |
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| T |
24845847 |
ataacatgtacggaaaattcagagagggagaaagacctcttctgtacgactaatggcaaagccgagctttgtatcttcctctctaagtttgatctctatt |
24845946 |
T |
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| Q |
310 |
gagaactctcctcccattggagcataccatagtcgaattgctctaac |
356 |
Q |
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| T |
24845947 |
gagaactctcctcccattggagcataccatagtcgaattgctctaac |
24845993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 242 - 359
Target Start/End: Complemental strand, 42044113 - 42043996
Alignment:
| Q |
242 |
agacctcttctgtacgactaatggcaaagccgagctttgtatcttcctctctaagtttgatctctattgagaactctcctcccattggagcataccatag |
341 |
Q |
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| T |
42044113 |
agacctcttcggtacgactaatggcgaatccaagttttgaatcttcttcttttagtttgatctcaatagaaagctctcctccaactggagcataccataa |
42044014 |
T |
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| Q |
342 |
tcgaattgctctaacaac |
359 |
Q |
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|||| ||||| |||||| |
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| T |
42044013 |
acgaactgctcgaacaac |
42043996 |
T |
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