View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9524_low_6 (Length: 315)
Name: NF9524_low_6
Description: NF9524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9524_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 24845362 - 24845675
Alignment:
| Q |
1 |
gacaagggttttgattttgtactttctgcacttgaagtcgccattgttcggtcccaaaggaagacatgtaggagaataggaactttagtgtgtcgatgta |
100 |
Q |
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| T |
24845362 |
gacaagggttttgattttgtactttctgcacttgaagtcgccattgttcggtcccaaaggaagacatgtaggagaataggaactttagtgtgtcgatgta |
24845461 |
T |
|
| Q |
101 |
aggagagtttctggcttaatgaaacagtgtcgtaacaacgaattgctccggttgatgaaaccatccatggaagaactctttgatttgaaagccttgaaac |
200 |
Q |
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| T |
24845462 |
aggagagtttctggcttaatgaaacagtgtcgtaacaacgaattgctccggttgatgaaaccatccatggaagaactctttgatttgaaagccttgaaac |
24845561 |
T |
|
| Q |
201 |
taccaataaccttgaagtttctgttgctagtttgtatagattgcttagccctgaacgtgtagctggtaaactttctttaccttcgtcgattaccgatgat |
300 |
Q |
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| T |
24845562 |
taccaataaccttgaagtttctgttgctagtttgtatagattgcttagccctgaacgtgtagctggtaaactttctttaccttcgtcgattaccgatgat |
24845661 |
T |
|
| Q |
301 |
gagatgaatataaa |
314 |
Q |
| |
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|||||||||||||| |
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| T |
24845662 |
gagatgaatataaa |
24845675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 48 - 277
Target Start/End: Complemental strand, 42044538 - 42044309
Alignment:
| Q |
48 |
tcggtcccaaaggaagacatgtaggagaataggaactttagtgtgtcgatgtaaggagagtttctggcttaatgaaacagtgtcgtaacaacgaattgct |
147 |
Q |
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||||||||||||||||||||| || ||||| |||||| | ||||||| || ||||| || |||||||| || ||||| ||||||||||| ||||||||| |
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| T |
42044538 |
tcggtcccaaaggaagacatggagcagaattggaactctggtgtgtctgtgcaaggatagcttctggctcaaggaaactgtgtcgtaacatcgaattgct |
42044439 |
T |
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| Q |
148 |
ccggttgatgaaaccatccatggaagaactctttgatttgaaagccttgaaactaccaataaccttgaagtttctgttgctagtttgtatagattgctta |
247 |
Q |
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|| ||||| || |||||||||||||| ||| |||| ||||| | ||||| ||||||||||| || |||| |||||||| ||||| || ||| |||||| |
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| T |
42044438 |
cctgttgaagataccatccatggaagtactttttggtttgacactcttgacactaccaataatctacaagtgtctgttgccagtttataaagactgctta |
42044339 |
T |
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| Q |
248 |
gccctgaacgtgtagctggtaaactttctt |
277 |
Q |
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|||| ||||| ||||| |||| | |||||| |
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| T |
42044338 |
gcccagaacgagtagcaggtacattttctt |
42044309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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