View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9525_1 (Length: 1059)
Name: NF9525_1
Description: NF9525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9525_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 950; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 950; E-Value: 0
Query Start/End: Original strand, 8 - 1050
Target Start/End: Complemental strand, 5775338 - 5774304
Alignment:
| Q |
8 |
aggagatttcgaggtttgtatgtcaaaacaagagttcaaggagacatattgtgagaatttgaagagagaagaccttgtcatcaagaaagccaaaaaagac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5775338 |
aggagatttcgaggtttgtatgtcaaaacaagagttcaaggagacatatggtgagaacttgaagagagaagaccttgtcatcaagaaagccaaaaaagac |
5775239 |
T |
|
| Q |
108 |
aatccctctgaccagatttatgtgttctttcctgagaatgataaggttgacgtccacaccttaaggacttacaccaatcgtatgtcctccgacaatgtct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5775238 |
aatccctctgaccagatttatgtgttctttcctgagaatgataaggttgacgtccacaccttaaggacttacaccaatcgtatgtcctccgacaatgtct |
5775139 |
T |
|
| Q |
208 |
acagagccatcgtcgtttgccagaccagccttactaaagcggcacgggacttctctgaaatcgcctccaaatttcatttggaagtttttcatgtgttttc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5775138 |
acagagccatcgtcgtttgccagaccagccttactaaagcggcacgggacttctctgaaatcgcctccaaatttcatttggaagtttttcatgtgttttc |
5775039 |
T |
|
| Q |
308 |
ggaggatgaaatatcgaagctgtataggatccggaagacggtgatggagatgcttagggataggaattacctcgtaggagattttgaggttaacatgtcg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5775038 |
ggaggatgaaatatcgaagctgtataggatccggaagacggtgatggagatgcttagggataggaattacctcgtaggagattttgaggttaacatgtcg |
5774939 |
T |
|
| Q |
408 |
aaagaagagttcaaggagaaatatggggagcacatgaagagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagatttatgtct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5774938 |
aaagaagagttcaaggagaaatatggggagcacatgaatagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagatttatgtct |
5774839 |
T |
|
| Q |
508 |
tcttcccggaggatgagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaatgtctacagggccatcatcgtttgccagac |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5774838 |
tcttcccggaggatgagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaatgtctacagggccatcatcgtttgccagac |
5774739 |
T |
|
| Q |
608 |
cagccttactaacatggcatggaacagtatctctcagttcgactccaaatatcatttggaagtttttcaggtaattcatcattcgatcgatcgatcaatc |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
5774738 |
cagccttactaacatggcatggaacagtatctctcagttcgactccaaatttcatttggaagtttttcaggtaattcatca----atcgatcaatcaatc |
5774643 |
T |
|
| Q |
708 |
aaattctgtggtggttgtttatggttgaggtaactgttgttagtgtgtgcgtgcttgcaggaggctgaattgctggttaatgtaagatatcacaagcttg |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5774642 |
aaattctgtggtggttgtttatggttgaggtaactgttgttagtgtatgcgtgcttgcaggaggctgaattgctggttaatgtaagatatcacaagcttg |
5774543 |
T |
|
| Q |
808 |
tgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttatnnnnnnnnnttgtggaa |
907 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5774542 |
tgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttataaaaaggaattgtggaa |
5774443 |
T |
|
| Q |
908 |
attttgtgttatttagaatgtaactaatcgaatgagtaaagttatatatataatagtatttcacctaggcatttgaaaaatttctgcacacgcacatgtg |
1007 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5774442 |
attttgtgttatttagaatgtaactaatcgaatgagtaaagt----tatataatagtatttcacctaggcatttgaaaaatttctgcacacacacatgtg |
5774347 |
T |
|
| Q |
1008 |
cttcatctctgatttttcacctttcttctttccatgatgatgt |
1050 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5774346 |
cttcatctctgatttttaacctttcttctttccatgatgatgt |
5774304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 300 - 890
Target Start/End: Complemental strand, 5768766 - 5768189
Alignment:
| Q |
300 |
gtgttttcggaggatgaaatatcgaagctgtataggatccggaagacggtgatggagatgcttagggataggaattacctcgtaggagattttgaggtta |
399 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5768766 |
gtgttttcggaggatgaaatatctaagctgtataggatccggaagacggtgatggagatgcttagagataggaattacctcgtaggagattttgaggtta |
5768667 |
T |
|
| Q |
400 |
acatgtcgaaagaagagttcaaggagaaatatggggagcacatgaagagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagat |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5768666 |
acatgtcgaaagaagagttcaaggagaaatatggggagcacatgaatagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagat |
5768567 |
T |
|
| Q |
500 |
ttatgtcttcttcccggaggatgagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaatgtctacagggccatcatcgtt |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
5768566 |
ttatgtcttcttcccggaggatgagaaggttggcgtccacaccttcaggacttgcaccaaacgtatgaactccgagaatgtctacagagccatcatcgtt |
5768467 |
T |
|
| Q |
600 |
tgccagaccagccttactaacatggcatggaacagtatctctcagttcgactccaaatatcatttggaagtttttcaggtaattcatcattcgatcgatc |
699 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
5768466 |
tgccagaccagccttactaacatggca---------ctctctgaaatcgactccaaatttcatttggaagtttttcaggtaattcatca----atccatc |
5768380 |
T |
|
| Q |
700 |
gatcaatcaaattctgtggtggttgtttatggttgaggtaactgttgttagtgtgtgcgtgcttgcaggaggctgaattgctggttaatgtaagatatca |
799 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||| |||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
5768379 |
aatcaatcaaattttgtggtggttgttaatggttgaggtaaccgttgttagtgtatgcgttcttgaaggaggctgaattgctggttaacgtaagatatca |
5768280 |
T |
|
| Q |
800 |
caagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttat |
890 |
Q |
| |
|
| |||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5768279 |
cgagcttgtgccagaacatcaggtgctgaccgacaatgagaagaaaaccttactcgagagatacaccgttaaagaaactcaggtcagttat |
5768189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 184; E-Value: 5e-99
Query Start/End: Original strand, 300 - 619
Target Start/End: Complemental strand, 5775421 - 5775102
Alignment:
| Q |
300 |
gtgttttcggaggatgaaatatcgaagctgtataggatccggaagacggtgatggagatgcttagggataggaattacctcgtaggagattttgaggtta |
399 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| | || ||||||||||||||||||||||| |||||| |
|
|
| T |
5775421 |
gtgttttcggaggatgaaatatcaaagctgtataggatccggaagaaggtgatggagatgcttcgcgacaggaattacctcgtaggagatttcgaggttt |
5775322 |
T |
|
| Q |
400 |
acatgtcgaaagaagagttcaaggagaaatatggggagcacatgaagagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagat |
499 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||| ||| || ||||||||||||||||||||||||| || || ||||| |||||||||||||||||||| |
|
|
| T |
5775321 |
gtatgtcaaaacaagagttcaaggagacatatggtgagaacttgaagagagaagaccttgtcatcaagaaagccaaaaaagacaatccctctgaccagat |
5775222 |
T |
|
| Q |
500 |
ttatgtcttcttcccggaggatgagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaatgtctacagggccatcatcgtt |
599 |
Q |
| |
|
|||||| ||||| || ||| |||| ||||||| |||||||||||| |||||||||||||| || ||| ||| || ||||||||||| |||||| ||||| |
|
|
| T |
5775221 |
ttatgtgttctttcctgagaatgataaggttgacgtccacaccttaaggacttacaccaatcgtatgtcctccgacaatgtctacagagccatcgtcgtt |
5775122 |
T |
|
| Q |
600 |
tgccagaccagccttactaa |
619 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5775121 |
tgccagaccagccttactaa |
5775102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 8 - 298
Target Start/End: Complemental strand, 5768683 - 5768399
Alignment:
| Q |
8 |
aggagatttcgaggtttgtatgtcaaaacaagagttcaaggagacatattgtgagaatttgaagagagaagaccttgtcatcaagaaagccaaaaaagac |
107 |
Q |
| |
|
||||||||| |||||| ||||| ||| ||||||||||||||| |||| | ||| | |||| |||||||||||||||||||| || || ||||| ||| |
|
|
| T |
5768683 |
aggagattttgaggttaacatgtcgaaagaagagttcaaggagaaatatggggagcacatgaatagagaagaccttgtcatcaacaaggcgaaaaaggac |
5768584 |
T |
|
| Q |
108 |
aatccctctgaccagatttatgtgttctttcctgagaatgataaggttgacgtccacaccttaaggacttacaccaatcgtatgtcctccgacaatgtct |
207 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||| |||| ||||||| |||||||||||| ||||||| |||||| |||||| |||||| ||||||| |
|
|
| T |
5768583 |
aatccctctgaccagatttatgtcttcttcccggaggatgagaaggttggcgtccacaccttcaggacttgcaccaaacgtatgaactccgagaatgtct |
5768484 |
T |
|
| Q |
208 |
acagagccatcgtcgtttgccagaccagccttactaaagcggcacgggacttctctgaaatcgcctccaaatttcatttggaagtttttca |
298 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5768483 |
acagagccatcatcgtttgccagaccagccttactaacatggcac------tctctgaaatcgactccaaatttcatttggaagtttttca |
5768399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 766 - 887
Target Start/End: Original strand, 465679 - 465800
Alignment:
| Q |
766 |
aggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacac |
865 |
Q |
| |
|
||||||| || |||||||||||| ||| | | || ||||||||| ||||||||| | || | ||||| |||||||||||| | |||||||||||||| |
|
|
| T |
465679 |
aggaggcagagttgctggttaatataaaagagcatgtgcttgtgcctgaacatcagattctcaatgacaccgagaagaaaaccttgcttgagagatacac |
465778 |
T |
|
| Q |
866 |
tgttaaagaaactcaggtcagt |
887 |
Q |
| |
|
||| || ||||||||||||||| |
|
|
| T |
465779 |
tgtcaaggaaactcaggtcagt |
465800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 911 - 945
Target Start/End: Complemental strand, 5768171 - 5768137
Alignment:
| Q |
911 |
ttgtgttatttagaatgtaactaatcgaatgagta |
945 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
5768171 |
ttgtgttatttagaatgtgactaatcgaatgagta |
5768137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University