View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9525_2 (Length: 639)
Name: NF9525_2
Description: NF9525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9525_2 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 263 - 639
Target Start/End: Complemental strand, 40315483 - 40315107
Alignment:
| Q |
263 |
aagggcttatattatcacattattccttcaatctttttcaacattagaggatctgaattcgcatcaaaggtatggatttttgagagaagagggataaagg |
362 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40315483 |
aagggcatatattatcacattattccttcaatctttttcaacattagaggatctgaattcgcatcaaaggtatggatttttgagagaagagggataaagg |
40315384 |
T |
|
| Q |
363 |
ttagaaagaatgaaagatagaggttagaaagaattttgctgataaatttttgtcaataacatttaacaaatgaatagtcgatgaaagtttaagttgacaa |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40315383 |
ttagaaagaatgaaagatagaggttagaaagaattttgctgataaatttttttcattaacagttaacaaatgaatagttgatgaaagtttaagttgacaa |
40315284 |
T |
|
| Q |
463 |
ggagttaattcatcctttgatttaattctcattgttaacgtaaagattcttttgatggatggttatttataactaactgagttcattgaactttaaagct |
562 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40315283 |
ggagttaattcacccttggatttaattctcattgttaaggtaaagatttttttgatggatggttatttataactaactgagttcattgaactttaaagct |
40315184 |
T |
|
| Q |
563 |
tgtctgacgtcaatgatccttcgaaacccagctaacctaaatataatagaaatgaagggaatatgaatcttgaaaat |
639 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40315183 |
tgtctgacgtcaatgatacttcgaaaccaagctaacctaaatataatagaaatgaagggaatatgaatcttgaaaat |
40315107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 40315734 - 40315640
Alignment:
| Q |
12 |
agagaatcaaatacattagcaaccaaaccatttcatattaacttaatcatactcgttcgggtttttgaacgacaacagaccctctcgagtttttg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40315734 |
agagaatcaaatacattagcaaccaaaccatttcatattaacttaatcatactcgttcgggtttttgaacgacaacagaccctctcgagtttttg |
40315640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 40315582 - 40315530
Alignment:
| Q |
164 |
gattctccacgatttttcaatttttcaatctcaacccttaactaacatttcac |
216 |
Q |
| |
|
|||||| |||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40315582 |
gattcttcacgatttctcaattttccaatctcaacccttaactaacatttcac |
40315530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University