View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9525_4 (Length: 438)

Name: NF9525_4
Description: NF9525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9525_4
NF9525_4
[»] chr1 (6 HSPs)
chr1 (1-339)||(9070903-9071238)
chr1 (1-228)||(8862765-8862986)
chr1 (100-225)||(9087308-9087427)
chr1 (100-275)||(8866730-8866899)
chr1 (134-225)||(9126479-9126561)
chr1 (384-419)||(9071294-9071329)


Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 9070903 - 9071238
Alignment:
Q  1 aaatgatgaattgttgagtatcaaaaacttttttggaaggcaattgtctgggtctgatattgacatcgagtgtgattcgtagtcaatatcagagacatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9070903 aaatgatgaattgttgagtatcaaaaacttttttggaaggcaattgtctgggtctgatattgacatcgagtgtgattcgtagtcaatatcagagacatgg 9071002  T
Q  101 aatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgttgatctt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  9071003 aatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacaca---ttgatctt 9071099  T
Q  201 gtgatgattccttaacgatttggaagggaaatttaataagaggttggtcaggtccacaatatgattctctgcactggtcatgagcattgccacttctgat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9071100 gtgatgattccttaacgatttggaagggaaatttaataagaggttggttaggtccacaatatgattctctgcactggtcatgagcattgccacttttgat 9071199  T
Q  301 aagcaagatcataagaagttgcatgatcaaagtaatatg 339  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  9071200 aagcaagatcataagaagttgcatgatcaaagtagtatg 9071238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 8862765 - 8862986
Alignment:
Q  1 aaatgatgaattgttgagtatcaaaaacttttttggaaggcaattgtctgggtctgatattgacatcgagtgtgattcgtagtcaatatcagagacatgg 100  Q
    ||||||||| ||||| ||| ||| ||||||||| |||| ||||||||| |||||    | ||| ||   || |||||||||||| || | | | ||| ||    
T  8862765 aaatgatgagttgttaagtttcagaaactttttaggaatgcaattgtccgggtccatcactgaaattcggtttgattcgtagtctatgtaatatacacgg 8862864  T
Q  101 aatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgttgatctt 200  Q
    ||||||||||||||||||| ||||||||| || |||||||||| ||| |||||||||||||||||||| |||||   ||||| |  |||   ||||||||    
T  8862865 aatttgattggacctgaagtggtagagaggaccatcatggtttccttgttttcagtacaatataggcaaaactc---aggatgagtaca---ttgatctt 8862958  T
Q  201 gtgatgattccttaacgatttggaaggg 228  Q
    |||||||||||| ||| | |||||||||    
T  8862959 gtgatgattcctcaactagttggaaggg 8862986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 100 - 225
Target Start/End: Original strand, 9087308 - 9087427
Alignment:
Q  100 gaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgttgatct 199  Q
    |||||||||||||||||||  || |||||| || ||||||||| ||||||||| ||||||||||| ||| |||||   ||||||||||||   |||||||    
T  9087308 gaatttgattggacctgaattggaagagagcacaatcatggttctcttatttttagtacaatataagcaaaactc---aggataaacaca---ttgatct 9087401  T
Q  200 tgtgatgattccttaacgatttggaa 225  Q
    ||||||||||||||||||| ||||||    
T  9087402 tgtgatgattccttaacgagttggaa 9087427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 100 - 275
Target Start/End: Original strand, 8866730 - 8866899
Alignment:
Q  100 gaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgttgatct 199  Q
    |||| ||| ||||||||||| |||||| |  || |||||||| ||||| |||| ||||||||||||||| |||||   ||||||||||||   || || |    
T  8866730 gaatatgaatggacctgaagtggtagataacaccatcatggtgttcttgttttgagtacaatataggcaaaactc---aggataaacaca---ttcatgt 8866823  T
Q  200 tgtgatgattccttaacgatttggaagggaaatttaataagaggttggtcaggtccacaatatgattctctgcact 275  Q
    ||||||||||||||||| | ||||||||| |||  |||||  |||| || |||||||||  |  ||||||||||||    
T  8866824 tgtgatgattccttaacaagttggaaggggaatcgaataatcggttcgtaaggtccacatgacaattctctgcact 8866899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 9126479 - 9126561
Alignment:
Q  134 atcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgttgatcttgtgatgattccttaacgatttggaa 225  Q
    ||||||||||||| ||||   |||||||| ||||| |||||   |||||||||||||||   ||||||||||||||||||||||| ||||||    
T  9126479 atcatggttttctgattt---gtacaatacaggcaaaactc---aggataaacacattg---atcttgtgatgattccttaacgagttggaa 9126561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 419
Target Start/End: Original strand, 9071294 - 9071329
Alignment:
Q  384 aagaaagtgtgattaggaagaacaaactctgtgctc 419  Q
    |||| |||||||||||||||||||||||||||||||    
T  9071294 aagagagtgtgattaggaagaacaaactctgtgctc 9071329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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