View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9525_5 (Length: 360)
Name: NF9525_5
Description: NF9525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9525_5 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 3238645 - 3238990
Alignment:
| Q |
1 |
agtacatgatcaagttgttacatcaggaaattgaaagcttaaccgataatgtaatgatcttcatactttgtaagttaatatgattctttctcaatagtgt |
100 |
Q |
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| T |
3238645 |
agtacatgatcaagttgttacatcaggaaattgaaagcttaaccgataatgtaatgatcttcatactttgtaagttaatatgattctttctcaatagtgt |
3238744 |
T |
|
| Q |
101 |
tggagttgaagctgtaagatttatgagatggagaatcatcactgaaacagtaaagcaattgagaagaaatccccagggacgattgagcaattcacatgga |
200 |
Q |
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| T |
3238745 |
tggagttgaagctgtaagatttatgagatggagaatcatcactgaaacagtaaagcaattgagaagaaatccccagggacgattgagcaattcacatgga |
3238844 |
T |
|
| Q |
201 |
cgattaataacttctccaaatgtgattctaagacgtactcagaaagtttcttcctcaaaggctattcatgctctgagtaaattccaatttactacataca |
300 |
Q |
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| T |
3238845 |
cgattaataacttctccaaatgtgattctaagacgtactcagaaagtttcttcctcaaaggctattcatgctctgagtaaattccaatttactacataca |
3238944 |
T |
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| Q |
301 |
catatcatcattgtcatgtgctcaatttttgtatgttttcgatatt |
346 |
Q |
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| T |
3238945 |
catatcatcattgtcatgtgctcaatttttgtatgttttcgatatt |
3238990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 3242949 - 3243022
Alignment:
| Q |
170 |
tccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagacgtactcaga |
243 |
Q |
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| T |
3242949 |
tccccatggacgattgagcaattcacatggacgattaagaacttctctaagtgtgattctcagatgtactcaga |
3243022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 3242864 - 3242915
Alignment:
| Q |
64 |
tactttgtaagttaatatgattctttctcaatagtgttggagttgaagctgt |
115 |
Q |
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|||||| ||| ||||||| ||||||||||||| ||||| ||||||||||||| |
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| T |
3242864 |
tactttataaattaatataattctttctcaatggtgttagagttgaagctgt |
3242915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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