View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9525_6 (Length: 357)
Name: NF9525_6
Description: NF9525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9525_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 10 - 184
Target Start/End: Complemental strand, 26450377 - 26450203
Alignment:
| Q |
10 |
agatgaagaggaggagccaaaagtttcgcgcaaataaaagaggatagaatctatcttttagagtaagttcaatgaacagaatttgaatttgtaacttcaa |
109 |
Q |
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| T |
26450377 |
agatgaagaggaggagccaaaagtttctcgcaaataaaagaggatagaatctatcttttagagtcagttcaatgaacagaatttgaatttgtaacttcaa |
26450278 |
T |
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| Q |
110 |
ataatatagttcagatcttcactagttgtaaaatggctaccacaattattaataataatttctcttttatcaaat |
184 |
Q |
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| T |
26450277 |
ataatatatttcagatcttcactagttgtaaaatggctaccacaattattaataataatttctcttttatcaaat |
26450203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 26437010 - 26436835
Alignment:
| Q |
14 |
gaagaggaggagccaaaagtttcgcgcaaataaaagaggatagaatctatcttttagagtaagttcaatgaacagaatttgaatttgtaacttcaaataa |
113 |
Q |
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| T |
26437010 |
gaagaggaggagccaaaagtttcgcgcgaataaaagaggatagaatttgtattttagtgtcagttcaatgaaaataatttgaatttgtaacttcatataa |
26436911 |
T |
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| Q |
114 |
tatagttcagatcttcactagttgtaaaatggctaccacaattattaataataatttctcttttatcaaataataa |
189 |
Q |
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| T |
26436910 |
aatagttcaaatcttcactagttgtaaaatggctaccacaattattaataataatttctcttttatcaaataataa |
26436835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 289 - 357
Target Start/End: Original strand, 71172 - 71240
Alignment:
| Q |
289 |
acaagatgaaatgcctatcatgcttctttcaaaacagtgcagcaaatgaaacatgaattgtgtatttgg |
357 |
Q |
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| T |
71172 |
acaagatgaaatgtctatcatgcttcttccaaaacagtgcagcaaatgaaacatgaattatgtgtttgg |
71240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 21896141 - 21896092
Alignment:
| Q |
207 |
ttcacaatgctcaagagtttggataaaatactaagcaataaagatcatga |
256 |
Q |
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| T |
21896141 |
ttcacaatgctcaagagtttggattaaatatgaagcactgaagatcatga |
21896092 |
T |
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