View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9525_9 (Length: 305)
Name: NF9525_9
Description: NF9525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9525_9 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 28 - 297
Target Start/End: Original strand, 42837052 - 42837316
Alignment:
| Q |
28 |
agatcgacatagtgtattagaaactaccaactcaccggaaaacccaagagaagttgctcgtggtagccgcgccgcttccataccagtaacctgaagatcg |
127 |
Q |
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| T |
42837052 |
agatcgacatagtgtattagaaactaccaactcaccggaaaacccaagaggagttgctcgtggtagccg-----cttccataccagtaacctgaagatcg |
42837146 |
T |
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| Q |
128 |
ctgcactgcttggagaattgatctgatcggaatcgatcattcatcatcaatggagatggagacagatgaaggtataaacagtcttaaagctcgcatagaa |
227 |
Q |
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| T |
42837147 |
ctgcactgcttggagaattgatctgatcggaatcaatcattcatcatcaatggagatggagacagatgaaggtataaacagtcttaaagctcgcatagaa |
42837246 |
T |
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| Q |
228 |
actcaacacaagtcgcacatggacatgctttcttctgtacaatctgttatacctaattttgtttcatctc |
297 |
Q |
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| T |
42837247 |
actcaacacaagtcgcacatgtacatgctttcttctgtacaatctgttatacctaattttgtttcttctc |
42837316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 214 - 297
Target Start/End: Complemental strand, 43915079 - 43914996
Alignment:
| Q |
214 |
aagctcgcatagaaactcaacacaagtcgcacatggacatgctttcttctgtacaatctgttatacctaattttgtttcatctc |
297 |
Q |
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| T |
43915079 |
aagctcgcatagaaacccaacacaagtcacacatggacatgctttcttctgtacaatccgttatacctaatcttgtttcttctc |
43914996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 43915156 - 43915105
Alignment:
| Q |
158 |
aatcgatcattcatcatcaatggagatggagacagatgaaggtataaacagt |
209 |
Q |
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|||| ||||||||||||| ||| | |||||||||||||||||| |||||||| |
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| T |
43915156 |
aatccatcattcatcatccatgaacatggagacagatgaaggtttaaacagt |
43915105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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