View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9526_high_10 (Length: 244)

Name: NF9526_high_10
Description: NF9526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9526_high_10
NF9526_high_10
[»] chr4 (6 HSPs)
chr4 (8-211)||(38296544-38296748)
chr4 (8-65)||(19648534-19648591)
chr4 (14-83)||(29328007-29328076)
chr4 (14-80)||(23872706-23872772)
chr4 (14-80)||(55299466-55299532)
chr4 (8-65)||(8935913-8935970)
[»] chr6 (2 HSPs)
chr6 (8-104)||(10362985-10363081)
chr6 (8-65)||(33640756-33640813)
[»] chr8 (4 HSPs)
chr8 (8-106)||(12332687-12332785)
chr8 (8-106)||(36493220-36493318)
chr8 (8-65)||(4987309-4987366)
chr8 (14-80)||(16375332-16375398)
[»] chr7 (3 HSPs)
chr7 (8-106)||(41804962-41805060)
chr7 (18-97)||(25018514-25018593)
chr7 (8-65)||(45993415-45993472)
[»] chr2 (5 HSPs)
chr2 (8-106)||(26147054-26147152)
chr2 (8-106)||(43311098-43311196)
chr2 (8-102)||(10689377-10689471)
chr2 (8-83)||(34357647-34357722)
chr2 (8-104)||(44028418-44028514)
[»] chr5 (3 HSPs)
chr5 (8-106)||(4297512-4297610)
chr5 (8-106)||(21084720-21084818)
chr5 (14-80)||(42260127-42260193)
[»] scaffold0061 (1 HSPs)
scaffold0061 (8-106)||(55504-55602)
[»] scaffold0017 (1 HSPs)
scaffold0017 (8-106)||(143031-143129)
[»] scaffold0016 (1 HSPs)
scaffold0016 (8-106)||(28613-28711)
[»] chr3 (6 HSPs)
chr3 (14-103)||(16672227-16672316)
chr3 (14-106)||(52250328-52250420)
chr3 (8-106)||(6825651-6825749)
chr3 (30-75)||(21735015-21735060)
chr3 (22-62)||(15028727-15028767)
chr3 (22-62)||(17914519-17914559)
[»] chr1 (4 HSPs)
chr1 (8-65)||(25504236-25504293)
chr1 (8-106)||(45271080-45271175)
chr1 (14-80)||(32352541-32352607)
chr1 (14-80)||(48072655-48072721)
[»] scaffold0070 (1 HSPs)
scaffold0070 (20-106)||(26957-27043)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 38296544 - 38296748
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgatttaaa 107  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  38296544 gagcatagacaggtagagaggtcaaaacagacttgagaaggactaaacggccaccaaatgacagaaaccgacttttaaactcatacagtctcgatttaaa 38296643  T
Q  108 taatcttgttttgttggaaataaataatcttgttttgacttcgagc-nnnnnnngtttcttttagaaaacattaattatgaatggattaattgtaatttt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||| |||||||||||||||||||||||||||||||||    
T  38296644 taatcttgttttgttggaaataaataatcttgttttgacttcgagcaaaaaaaagtttcttttagagaacattaattatgaatggattaattgtaatttt 38296743  T
Q  207 gcatt 211  Q
    |||||    
T  38296744 gcatt 38296748  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 19648534 - 19648591
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaa 65  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||| ||||||||| ||||    
T  19648534 gagcatagacaggtagagaggtcaacacagatttgagaagaaccaaacggccagcaaa 19648591  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 29328076 - 29328007
Alignment:
Q  14 agacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgactttt 83  Q
    ||||||||||||||||||| ||| |||| ||||||| ||| || | |||||| ||||| |||||||||||    
T  29328076 agacaggtagagaggtcaagacaaactttagaagaattaagcgactaccaaacgacaggaaccgactttt 29328007  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 23872772 - 23872706
Alignment:
Q  14 agacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgact 80  Q
    ||||||| ||||||||||| ||||| ||||| ||||| || || |||||||| || |||||||||||    
T  23872772 agacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaaaagagagaaaccgact 23872706  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 55299466 - 55299532
Alignment:
Q  14 agacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgact 80  Q
    ||||||| ||||||||||| ||||| ||||| ||||| || || |||||||| || |||||||||||    
T  55299466 agacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaaaagagagaaaccgact 55299532  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 8935913 - 8935970
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaa 65  Q
    ||||| ||||||  ||||||||||| ||||| ||||||||||| ||||||| ||||||    
T  8935913 gagcatagacagacagagaggtcaacacagatttgagaagaaccaaacggcaaccaaa 8935970  T

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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 10362985 - 10363081
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgattt 104  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||||| |||||    
T  10362985 gagcatagacaggtagagaggtcaagacagacttgagaagaactaaacgaccaccaaacgacagaaaccgacttttgaaccctgacagtctagattt 10363081  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 33640756 - 33640813
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaa 65  Q
    ||||| ||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||    
T  33640756 gagcatagacaggcagagaggtcaacacagatttgagaagaaccaaacggccaccaaa 33640813  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 12332687 - 12332785
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgatttaa 106  Q
    ||||| ||||||||||||||||||| |||||||| |||||||| |||||||||||||| || | ||||||||| |||||| |||||| |||||||||||    
T  12332687 gagcatagacaggtagagaggtcaagacagactttagaagaaccaaacggccaccaaacgataaaaaccgactattgaacccagacaatctcgatttaa 12332785  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 36493220 - 36493318
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgatttaa 106  Q
    ||||| ||||||||||||||||||| |||||||| || |||||||| ||||||||||| || | ||||||||| |||||  |||||| |||||||||||    
T  36493220 gagcatagacaggtagagaggtcaagacagactttaggagaactaaccggccaccaaacgataaaaaccgactattgaaaccagacaatctcgatttaa 36493318  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 4987366 - 4987309
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaa 65  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  4987366 gagcatagacaggtagagaggtcaacacagatttgagaagaaccaaacggccaccaaa 4987309  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 16375398 - 16375332
Alignment:
Q  14 agacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgact 80  Q
    ||||||| ||||||||||| ||||| ||||| ||||| || || |||||||| || |||||||||||    
T  16375398 agacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaaaagagagaaaccgact 16375332  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 41805060 - 41804962
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgatttaa 106  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||||| || | ||||||||| |||||| |||||| ||| |||||||    
T  41805060 gagcatagacaggtagagaggtcaagacagactttagaagaactaaccggccaccaaacgataaaaaccgactattgaacccagacaatcttgatttaa 41804962  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 25018593 - 25018514
Alignment:
Q  18 aggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtc 97  Q
    ||||| ||||||||| |||||||| ||||||||||| | ||||||||| || | ||||||||| ||||||||||||||||    
T  25018593 aggtaaagaggtcaagacagactttagaagaactaacctgccaccaaacgataaaaaccgactattgaactcagacagtc 25018514  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 45993415 - 45993472
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaa 65  Q
    ||||| ||||||| ||||||||||| ||||| ||||||||||| ||||| ||||||||    
T  45993415 gagcatagacaggcagagaggtcaacacagatttgagaagaaccaaacgaccaccaaa 45993472  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 26147054 - 26147152
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgatttaa 106  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||| | ||||||||| || | ||||||||| ||||||  |||||||||||||||||    
T  26147054 gagcatagacaggtagagaggtcaagacagactttagaagaactaacctgccaccaaacgataaaaaccgactattgaaccgagacagtctcgatttaa 26147152  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 43311098 - 43311196
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgatttaa 106  Q
    ||||| |||||||||||||| | ||||||||||| ||||||||||| | ||||||||| || | ||||||||| |||||| |||| | |||||||||||    
T  43311098 gagcatagacaggtagagagataaaaacagactttagaagaactaacctgccaccaaacgataaaaaccgactattgaacccagataatctcgatttaa 43311196  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 10689377 - 10689471
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgat 102  Q
    ||||| ||||||||||||||||||| ||| |||| |||||||||||  |||| ||||| || | ||||||||| |||||| || |||||||||||    
T  10689377 gagcatagacaggtagagaggtcaagacatactttagaagaactaactggccgccaaacgataaaaaccgactattgaacccatacagtctcgat 10689471  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 34357647 - 34357722
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgactttt 83  Q
    ||||| ||||||||| | ||||||||| |||||||||||||| |||||| |||||||| |||| |||| |||||||    
T  34357647 gagcatagacaggtaaaaaggtcaaaagagacttgagaagaattaaacgaccaccaaaagacaaaaactgactttt 34357722  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 44028514 - 44028418
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgattt 104  Q
    ||||| |||||| ||||| |||||| |||||||| || |||| ||||||| |||| || || |||||||||||||   | ||||||||||| |||||    
T  44028514 gagcatagacagatagagcggtcaagacagactttaggagaattaaacggtcaccgaaggagagaaaccgactttgccaatcagacagtctagattt 44028418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 4297610 - 4297512
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgatttaa 106  Q
    ||||| ||||||||||||||||||| | |||||| || |||||||| ||||||||||| || | ||||||||| ||||| ||||||| |||||||||||    
T  4297610 gagcatagacaggtagagaggtcaagatagactttaggagaactaaccggccaccaaacgataaaaaccgactattgaaatcagacaatctcgatttaa 4297512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 21084720 - 21084818
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgatttaa 106  Q
    ||||| ||||||||||||||||||| |||||||| ||||| ||||| || ||||||||||| | || || ||| ||||||| ||||||||||| |||||    
T  21084720 gagcatagacaggtagagaggtcaagacagactttagaaggactaaccgaccaccaaatgataaaagccaactattgaactaagacagtctcgctttaa 21084818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 42260127 - 42260193
Alignment:
Q  14 agacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgact 80  Q
    ||||||| || |||||||| ||||||||||||||||  |||||||| |||||||| ||||| |||||    
T  42260127 agacaggaagcgaggtcaagacagacttgagaagaatcaaacggcctccaaatgatagaaagcgact 42260193  T

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Target: scaffold0061 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 55504 - 55602
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgatttaa 106  Q
    ||||| ||||||||||||||||||| | |||||| ||||||||||| | ||||||||| || | ||||||||| |||||| | |||||||||| |||||    
T  55504 gagcatagacaggtagagaggtcaagatagactttagaagaactaacctgccaccaaacgataaaaaccgactattgaaccctgacagtctcgttttaa 55602  T

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Target: scaffold0017 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 143129 - 143031
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgatttaa 106  Q
    ||||| ||||||||||||||||||| | |||||| ||||||||||| | ||||||||| || | ||||||||| |||||| | |||||||||| |||||    
T  143129 gagcatagacaggtagagaggtcaagatagactttagaagaactaacctgccaccaaacgataaaaaccgactattgaaccctgacagtctcgttttaa 143031  T

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Target: scaffold0016 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 28613 - 28711
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgatttaa 106  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||| | | ||||||| || | ||||||||| |||||| |||| | |||||||||||    
T  28613 gagcatagacaggtagagaggtcaagacagactttagaagaactaacctgtcaccaaacgataaaaaccgactattgaacccagataatctcgatttaa 28711  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 16672316 - 16672227
Alignment:
Q  14 agacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgatt 103  Q
    ||||||||||||||||||| |||||||| || |||||||| |||||| |||| || | ||||||||| |||||  |||||| ||||||||    
T  16672316 agacaggtagagaggtcaagacagactttaggagaactaaccggccatcaaacgataaaaaccgactattgaaaccagacaatctcgatt 16672227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 52250420 - 52250328
Alignment:
Q  14 agacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgatttaa 106  Q
    ||||||||||||||||||| ||| |||| || |||||||| | ||| ||||| || |  |||||||| |||||| ||||||||||||||||||    
T  52250420 agacaggtagagaggtcaagacaaactttaggagaactaacctgcccccaaacgataagaaccgactattgaacccagacagtctcgatttaa 52250328  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 6825651 - 6825749
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgatttaa 106  Q
    ||||| ||||||||||| ||||||| || ||||| |  |||||||| ||||||||||| || | |||| |||| |||||  |||||| |||||||||||    
T  6825651 gagcatagacaggtagaaaggtcaagacggactttaagagaactaaccggccaccaaacgataaaaactgactattgaaaccagacaatctcgatttaa 6825749  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 21735060 - 21735015
Alignment:
Q  30 caaaacagacttgagaagaactaaacggccaccaaatgacagaaac 75  Q
    |||||||||| | |||||||| ||||||||||||||||| ||||||    
T  21735060 caaaacagacatcagaagaaccaaacggccaccaaatgaaagaaac 21735015  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 15028767 - 15028727
Alignment:
Q  22 agagaggtcaaaacagacttgagaagaactaaacggccacc 62  Q
    ||||||| ||| |||||||| ||||||||||||||||||||    
T  15028767 agagaggacaagacagactttagaagaactaaacggccacc 15028727  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 17914519 - 17914559
Alignment:
Q  22 agagaggtcaaaacagacttgagaagaactaaacggccacc 62  Q
    ||||||| ||| |||||||| ||||||||||||||||||||    
T  17914519 agagaggacaagacagacttaagaagaactaaacggccacc 17914559  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 25504293 - 25504236
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaa 65  Q
    ||||| ||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||    
T  25504293 gagcatagacaggaagagaggtcaacacagatttgagaagaaccaaacggccaccaaa 25504236  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 45271080 - 45271175
Alignment:
Q  8 gagcagagacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgatttaa 106  Q
    ||||| ||||||| ||||||||||| |||||||| || ||||| || ||||||||||| ||    |||||||| |||||  | ||||||||||||||||    
T  45271080 gagcatagacaggaagagaggtcaagacagacttaaggagaaccaaccggccaccaaacga---taaccgactattgaaacctgacagtctcgatttaa 45271175  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 32352607 - 32352541
Alignment:
Q  14 agacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgact 80  Q
    ||||||| ||||||||||| ||||| ||||| ||||| || || |||||||| || |||||||||||    
T  32352607 agacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaaaagagagaaaccgact 32352541  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 48072721 - 48072655
Alignment:
Q  14 agacaggtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgact 80  Q
    ||||||| ||||||||||| ||||| ||||| ||||| || || |||||||| || |||||||||||    
T  48072721 agacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaaaagagagaaaccgact 48072655  T

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Target: scaffold0070 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 26957 - 27043
Alignment:
Q  20 gtagagaggtcaaaacagacttgagaagaactaaacggccaccaaatgacagaaaccgacttttgaactcagacagtctcgatttaa 106  Q
    ||||||||||||| |||||||| || |||||||| || ||| |||| || | ||| ||||| |||||  ||||||||||||||||||    
T  26957 gtagagaggtcaagacagactttaggagaactaaccgaccatcaaacgataaaaatcgactattgaaaccagacagtctcgatttaa 27043  T

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