View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9526_high_12 (Length: 232)
Name: NF9526_high_12
Description: NF9526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9526_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 38609474 - 38609266
Alignment:
| Q |
1 |
ccacaaactaaacaacaatgtgagttaactacaaattcagagtttcactttagtatatgaacaacagtgtaactgtaaacttattaactacaaatttaat |
100 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38609474 |
ccacaaactaaacaacaatgcgagttaactacaaattcagagtttcactttagtacatgaacaacagtgtaactgtaaacttattaactacaaatttcat |
38609375 |
T |
|
| Q |
101 |
agagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38609374 |
agagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggc |
38609275 |
T |
|
| Q |
201 |
ttgacctga |
209 |
Q |
| |
|
||||||||| |
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|
| T |
38609274 |
ttgacctga |
38609266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 38794257 - 38794049
Alignment:
| Q |
1 |
ccacaaactaaacaacaatgtgagttaactacaaattcagagtttcactttagtatatgaacaacagtgtaactgtaaacttattaactacaaatttaat |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38794257 |
ccacaaactaaacaacaatgcgagttaactacaaattcagagtttcactttagtacatgaacaacagtgtaactgtaaacttattaactacaaatttcat |
38794158 |
T |
|
| Q |
101 |
agagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38794157 |
agagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggc |
38794058 |
T |
|
| Q |
201 |
ttgacctga |
209 |
Q |
| |
|
||||||||| |
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| T |
38794057 |
ttgacctga |
38794049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 38120719 - 38120857
Alignment:
| Q |
74 |
tgtaaacttattaactacaaatttaatagagattcacttcagcagagaaagaactaaaccgcaatct---tcatcatcatcgaagcatcgcactcacagg |
170 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38120719 |
tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacagg |
38120818 |
T |
|
| Q |
171 |
ccatggtgatcttcaatctcaaccattggcttgacctga |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38120819 |
ccatggtgatcttcaatctcaaccattggcttgacctga |
38120857 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 34592957 - 34592867
Alignment:
| Q |
119 |
agaaagaactaaaccgcaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacc |
206 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
34592957 |
agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacc |
34592867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34593020 - 34592970
Alignment:
| Q |
1 |
ccacaaactaaacaacaatgtgagttaactacaaattcagagtttcacttt |
51 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
34593020 |
ccacaaactaaacaacaatgcaagttaactacaaattcagagtttcacttt |
34592970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 38287498 - 38287450
Alignment:
| Q |
85 |
taactacaaatttaatagagattcacttcagcagagaaagaactaaacc |
133 |
Q |
| |
|
||||||||| ||| |||||| |||||||||||||| |||||| |||||| |
|
|
| T |
38287498 |
taactacaagtttcatagagtttcacttcagcagaaaaagaagtaaacc |
38287450 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 38609538 - 38609502
Alignment:
| Q |
14 |
aacaatgtgagttaactacaaattcagagtttcactt |
50 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38609538 |
aacaatgtgaattaactacaaattcaaagtttcactt |
38609502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 38794321 - 38794285
Alignment:
| Q |
14 |
aacaatgtgagttaactacaaattcagagtttcactt |
50 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38794321 |
aacaatgtgaattaactacaaattcaaagtttcactt |
38794285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 28730296 - 28730431
Alignment:
| Q |
74 |
tgtaaacttattaactacaaatttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca |
173 |
Q |
| |
|
|||||||||||||||||||||||| ||| || || |||||||||||||||||| |||| |||||||||| |||| ||| || |||| ||||||||||||| |
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|
| T |
28730296 |
tgtaaacttattaactacaaatttcatatagttttacttcagcagagaaagaagtaaatcgcaatcttcgtcatgatcaaaccatcacactcacaggcca |
28730395 |
T |
|
| Q |
174 |
tggtgatcttcaatctcaaccattggcttgacctga |
209 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||| |
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|
| T |
28730396 |
tggtgatcttcaatctcaaacattggcctgacctga |
28730431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 33078648 - 33078483
Alignment:
| Q |
1 |
ccacaaactaaacaacaatgtgagttaactacaaattcagagtttcactttagtatatgaacaacagtgtaactgtaaacttattaactacaaatttaat |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |
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|
| T |
33078648 |
ccacaaactaaacaacaatgcgagttaactacaaattcagagtttcacttttgtacatgaacaacagt------gtaaacttattaactacaaattt--- |
33078558 |
T |
|
| Q |
101 |
agagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaat |
187 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |
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|
| T |
33078557 |
---------------cagagaaagaagtaaaccgcgatcttcatcatcatcattgaagcatcgcagtcacagcccatggtgatcttcaat |
33078483 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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