View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9526_high_3 (Length: 398)
Name: NF9526_high_3
Description: NF9526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9526_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 14 - 388
Target Start/End: Complemental strand, 6623434 - 6623060
Alignment:
| Q |
14 |
gtttggaggttaacaataaaaatggtgtattttcagaagggatccgtgaggagatagcaatcattgaacatctctccaaagtgtatagctttgaggaaat |
113 |
Q |
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| T |
6623434 |
gtttggaagttaacaataaaaatggtgtattttcagaagagatccgtgaggagatagcaatcattgaacatctctccaaagtgtatagctttgaggaaat |
6623335 |
T |
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| Q |
114 |
aaaagaagcaactgagaattttagttcaaagaatagaatcaaaggttctttatttcgcggcatattcaacaatggcaaggaagtattggctgttaaaaga |
213 |
Q |
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| T |
6623334 |
aaaagaagcaactgagaattttagttcaaagaatagaatcaaagattctttatttcgcggcatattcaacaatggcaaggaagtgttggctgttaaaaga |
6623235 |
T |
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| Q |
214 |
atgagaggagatgcttccaaagaagtcaatttgctgaaaaggatcaatcatttcaacctgataaagctgcaaggttactgtgaaaacgatgcttgcatct |
313 |
Q |
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| T |
6623234 |
atgagaggagatgcttccaaagaagtcaatttgctgaaaaggatcaatcatttcaacctgataaagctgcaaggttactgtgaaaacgatgcttgcatct |
6623135 |
T |
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| Q |
314 |
atcttgtttatgaatacatggaaaatgggtctttaagggaatggctttgcaaggataattcaattgaacaccaaa |
388 |
Q |
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| T |
6623134 |
atcttgtttatgaatacatggaaaatgggtctttaagggaatggctttgcaaggataattcaattgaacaccaaa |
6623060 |
T |
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