View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9526_high_4 (Length: 390)
Name: NF9526_high_4
Description: NF9526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9526_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 131 - 373
Target Start/End: Complemental strand, 51855556 - 51855314
Alignment:
| Q |
131 |
gtactaattgtttgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtaca |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855556 |
gtactaattgtttgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtaca |
51855457 |
T |
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| Q |
231 |
tatcacaaaattatcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagt |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | |
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| T |
51855456 |
tatcacaaaattatcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagatcagatctagcaagttattggacaaact |
51855357 |
T |
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| Q |
331 |
taattctgtttaatgtttcaataatggatgctcccttgtgatg |
373 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51855356 |
taattctgtttaatgtttaaataatggatgctcccttgtgatg |
51855314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 131 - 373
Target Start/End: Original strand, 35042925 - 35043167
Alignment:
| Q |
131 |
gtactaattgtttgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtaca |
230 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35042925 |
gtactaattgtttgctctgcttctggatggcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtaca |
35043024 |
T |
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| Q |
231 |
tatcacaaaattatcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagt |
330 |
Q |
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| T |
35043025 |
tatcacaaaattatcaaagtaatgaagaggtttcggatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacaaact |
35043124 |
T |
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| Q |
331 |
taattctgtttaatgtttcaataatggatgctcccttgtgatg |
373 |
Q |
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| T |
35043125 |
gaattctgtttaatgtttaaataatggatgctcccttgtgatg |
35043167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 51855960 - 51855844
Alignment:
| Q |
19 |
catgttgacttaactttacttgaatataaaatgttagaattatgttattggagaatagtctttggccctaaggctggtaagggaagttcatctgccagat |
118 |
Q |
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| T |
51855960 |
catgttgacttaactttacttgaatataaaatgttagaattatgttattggagaatagcctttggccctaaggctggtaagggaagttcatctgccagat |
51855861 |
T |
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| Q |
119 |
ttgtgtatttgtgtact |
135 |
Q |
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||||||||||||||||| |
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| T |
51855860 |
ttgtgtatttgtgtact |
51855844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 35042588 - 35042641
Alignment:
| Q |
82 |
ggccctaaggctggtaagggaagttcatctgccagatttgtgtatttgtgtact |
135 |
Q |
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| T |
35042588 |
ggccctaaggctggtaggagaagttcatctgccagatttgtgtatttgtgtact |
35042641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 244 - 373
Target Start/End: Complemental strand, 8944678 - 8944549
Alignment:
| Q |
244 |
tcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagttaattctgtttaa |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||| |
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| T |
8944678 |
tcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatgtagcaagttattggacaaacttaattctgtttaa |
8944579 |
T |
|
| Q |
344 |
tgtttcaataatggatgctcccttgtgatg |
373 |
Q |
| |
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||||| |||||||||||||||| ||||||| |
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| T |
8944578 |
tgtttaaataatggatgctcccctgtgatg |
8944549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 8945147 - 8945031
Alignment:
| Q |
19 |
catgttgacttaactttacttgaatataaaatgttagaattatgttattggagaatagtctttggccctaaggctggtaagggaagttcatctgccagat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8945147 |
catgttgacttaactttacttgaatataaaatgttagaattatgttattggagaatagcctttgcccctaaggctggtaagggaagttcatctgccagat |
8945048 |
T |
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| Q |
119 |
ttgtgtatttgtgtact |
135 |
Q |
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||||||||||||||||| |
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| T |
8945047 |
ttgtgtatttgtgtact |
8945031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 142 - 269
Target Start/End: Complemental strand, 1869644 - 1869515
Alignment:
| Q |
142 |
ttgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaaatgagatggctatcaaccttggaatgtacatatcac--aaa |
239 |
Q |
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|||||||| ||| |||| |||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||||| || |
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| T |
1869644 |
ttgctctggttccggatggcagattgaagaagcaaaacttttttgtgctcaaggtcaaaatgaaatggctatcaaccttaggatgtacatatcaccaaat |
1869545 |
T |
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| Q |
240 |
attatcaaagtaatgaagaggtttcagatg |
269 |
Q |
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|||||||||||||||||||| |||||||| |
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| T |
1869544 |
attatcaaagtaatgaagagacttcagatg |
1869515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 8944743 - 8944674
Alignment:
| Q |
131 |
gtactaattgtttgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8944743 |
gtactaattgtttgctctgcttctggatagcagattgaagaagcaaagctttttcgtgctcaaggtcaaa |
8944674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 266 - 373
Target Start/End: Original strand, 26887003 - 26887110
Alignment:
| Q |
266 |
gatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagttaattctgtttaatgtttcaataatggatgctccc |
365 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |
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| T |
26887003 |
gatgtatatcgcttgattgggaagtggccggcagagaccagatctagcaagttattggacaaacttaattctgtttaatgtttaaataatggatgctccc |
26887102 |
T |
|
| Q |
366 |
ttgtgatg |
373 |
Q |
| |
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|||||||| |
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| T |
26887103 |
ttgtgatg |
26887110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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