View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9526_low_1 (Length: 653)
Name: NF9526_low_1
Description: NF9526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9526_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 566; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 18 - 646
Target Start/End: Complemental strand, 23697684 - 23697055
Alignment:
| Q |
18 |
aaagtgtgtatggaaaagtttgtcatggtgtcgaggatggtttggtgaagaagaaatacaacgtagatggtgcatgtttcgtcgataactattaaaaaga |
117 |
Q |
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| T |
23697684 |
aaagtgtgtatggaaaagtttgtcatggtgttggggatggtttggtgaagaagaaatgcaacgtagatggtgcatgtttcgtcgataactattaaaaaga |
23697585 |
T |
|
| Q |
118 |
caaaatcatatggaagagaagggtttccagaaactgttg-tgcaccacaaaacaagaaacaaaaataaaactcctactcaatattacatatcacaatcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23697584 |
caaaatcatatggaagagaagggtttccagaaactgttaatgcaccacaaaacaagaaacaaaaataaaactcctactcaatattacatatcaaaatcat |
23697485 |
T |
|
| Q |
217 |
attttcaaatatacatcaatcaagcaattgatgtaacgttgtgctatgcaatttcactcgtcatgccatttctatccagttgcacacttataatgggagt |
316 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23697484 |
attttcaaatatatatcaatcaagcaattgatgtaacgttgtgctatgcaatttcactcgtcatgcaatttctatccagttgcacacttataatgggagt |
23697385 |
T |
|
| Q |
317 |
cagtattccaagtggatccacatccatagcaaaattgattaccacacctgcggataaaatcaatatgccaaattttttcttacaaatcaaagcagaataa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||| |
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| T |
23697384 |
cagtattccaagtggatccacatccatagcaaaattgattaccacacctgcggataaaaacaatatgacaaatttttttttacaaatcaaagcagaataa |
23697285 |
T |
|
| Q |
417 |
ctaatatttaagcaagcacccaaaataaaaatgcaaaagtagaattcttaacaaaagagaattgtctatacctgcatgaaatgcgagtgcacccctcaat |
516 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
23697284 |
ctaatatttaagcaagcaccaaaaataaaaatgcaaaagtagaattcttaacaaaagagaattgtctatacctgcatgaaatgcgagtacatccctcaat |
23697185 |
T |
|
| Q |
517 |
tttctccacatagaagctgcactttggacatcttttccatctcttgttcttagcaagttccatggccattagatctttcctccctcgctcgccgtcttcc |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23697184 |
tttctccacatagaagctgcactttggacatcttttccatctcttgttcttagcaagttccatggccattagatctttcctccctcgctcgccatcttcc |
23697085 |
T |
|
| Q |
617 |
aagctttgaaactctctacaatcaacacca |
646 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
23697084 |
aagctttgaaactctctacaatcaacacca |
23697055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 451 - 645
Target Start/End: Original strand, 23700682 - 23700876
Alignment:
| Q |
451 |
aaaagtagaattcttaacaaaagagaattgtctatacctgcatgaaatgcgagtgcacccctcaattttctccacatagaagctgcactttggacatctt |
550 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||||| || ||| ||||||| ||||||||||||| ||||||||||||||| |
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| T |
23700682 |
aaaagtagaatttttaacaaaagagaattgaatatacctgcatgaaatgcgagtacatcccacaattttttccacatagaagccacactttggacatctt |
23700781 |
T |
|
| Q |
551 |
ttccatctcttgttcttagcaagttccatggccattagatctttcctccctcgctcgccgtcttccaagctttgaaactctctacaatcaacacc |
645 |
Q |
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| T |
23700782 |
ttccatctcttgttctttgcaagttccatggccattagatcttccatccctcgctcgccgtctttcaagctttgaaacactttacaatcaacacc |
23700876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 513 - 645
Target Start/End: Complemental strand, 23695057 - 23694925
Alignment:
| Q |
513 |
caattttctccacatagaagctgcactttggacatcttttccatctcttgttcttagcaagttccatggccattagatctttcctccctcgctcgccgtc |
612 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || |
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| T |
23695057 |
caattttttccacatagaagccacactttggacatcttttccatctcttgttcttagcaagttccatggccattagatcttccctccctcgctcaccatc |
23694958 |
T |
|
| Q |
613 |
ttccaagctttgaaactctctacaatcaacacc |
645 |
Q |
| |
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|| ||||||| |||||||| ||||||||||||| |
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| T |
23694957 |
tttcaagcttagaaactctttacaatcaacacc |
23694925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 36718638 - 36718588
Alignment:
| Q |
23 |
gtgtatggaaaagtttgtcatggtgtcgaggatggtttggtgaagaagaaa |
73 |
Q |
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|||||||||||||||||||||||||| | ||||||| ||||| |||||||| |
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| T |
36718638 |
gtgtatggaaaagtttgtcatggtgttgtggatggtatggtggagaagaaa |
36718588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 367
Target Start/End: Original strand, 23700587 - 23700648
Alignment:
| Q |
306 |
ataatgggagtcagtattccaagtggatccacatccatagcaaaattgattaccacacctgc |
367 |
Q |
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||||||||| | | ||||||||| || ||||| ||||||||||||||||| |||||||||| |
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| T |
23700587 |
ataatgggactgattattccaaggagaaccacagccatagcaaaattgattgccacacctgc |
23700648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 451 - 592
Target Start/End: Original strand, 8148820 - 8148963
Alignment:
| Q |
451 |
aaaagtagaattcttaacaaaagagaat--tgtctatacctgcatgaaatgcgagtgcacccctcaattttctccacatagaagctgcactttggacatc |
548 |
Q |
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||||||||||||||||||| |||| ||| ||||||||||||||| |||| || | || || | |||| |||||||||||| |||| ||||||| | |
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| T |
8148820 |
aaaagtagaattcttaacataagaaaatattgtctatacctgcatctaatgtgattacatccaccttttttttccacatagaagttgcatcttggacacc |
8148919 |
T |
|
| Q |
549 |
ttttccatctcttgttcttagcaagttccatggccattagatct |
592 |
Q |
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|||||||| |||| |||||||||||||||| |||||||||||| |
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| T |
8148920 |
ttttccatttctttttcttagcaagttccagagccattagatct |
8148963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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