View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9526_low_14 (Length: 346)
Name: NF9526_low_14
Description: NF9526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9526_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 33446417 - 33446715
Alignment:
| Q |
15 |
ggacatcatgctaaccttaagcatggaagtattgtcatcgcagccattacaagttgtactaatacatcaaaccctagtgcaatgcttagtgctggtcttg |
114 |
Q |
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| T |
33446417 |
ggacatcatgctaaccttaagcatggaagtattgtcatcgcagccattacaagttgtactaatacatcaaaccctagtgcaatgcttagtgctggtcttg |
33446516 |
T |
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| Q |
115 |
tcgcaaagaaagcctgtgaactagatttggaggttagtctcaactctcaacacatacatgtaaaatcaaaatgaaaattgga--caaaccttcgattccg |
212 |
Q |
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| T |
33446517 |
tcgcaaagaaagcctgtgaactaggtttggaggttagtctgaaatc-------------------tcaaaatgaaatttggatgcaaaccttcgattccg |
33446597 |
T |
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| Q |
213 |
attggctagatagtctaactataacatcaatcattttgatatgttgtttccatgtgattttatatcaggtcaagccatggattaaaacaagtcttgctcc |
312 |
Q |
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| T |
33446598 |
attggctagatagtctaactataatatcaatcattttgatatgttgtttccatgtgattttatatcaggtcaagcgatggattaaaacaagtcttgctcc |
33446697 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 28306211 - 28306150
Alignment:
| Q |
63 |
acaagttgtactaatacatcaaaccctagtgcaatgcttagtgctggtcttgtcgcaaagaa |
124 |
Q |
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| T |
28306211 |
acaagttgtacaaatacatcaaacccaagtgttatgcttggagctggtcttgttgcaaagaa |
28306150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 37235900 - 37235961
Alignment:
| Q |
63 |
acaagttgtactaatacatcaaaccctagtgcaatgcttagtgctggtcttgtcgcaaagaa |
124 |
Q |
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| T |
37235900 |
acaagttgtacaaatacatcaaacccaagtgttatgcttggagctggtcttgttgcaaagaa |
37235961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 17039483 - 17039443
Alignment:
| Q |
278 |
caggtcaagccatggattaaaacaagtcttgctcctggctc |
318 |
Q |
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| T |
17039483 |
caggtcaagccttgggttaaaacaagtcttgctccaggctc |
17039443 |
T |
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