View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9526_low_17 (Length: 318)
Name: NF9526_low_17
Description: NF9526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9526_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 48643046 - 48643343
Alignment:
| Q |
1 |
caactatattgctgcttgtgatgcctatagcatactgattttattaggttgtcattgtctatggcttttcaaaaaggttatttcattttaataggaatgg |
100 |
Q |
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| T |
48643046 |
caactatattgctgcttgtgatgcctatagcatactgattttattaggttgtcattgtctatggcttttcaaaaaggttatttcattttaatagggatgg |
48643145 |
T |
|
| Q |
101 |
aatagtaacaacacgttatgcatcattgaatttcataaaccgttagttactggcttgtttttgaaacatgtgaaagttcaattagtaactcactttcttt |
200 |
Q |
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| T |
48643146 |
aatagtaacaacacgttatgcatcattgaatttcataaaccgttagttactggcttgtttttgaaacatgtgaaagttcaattagtaactcactttcttt |
48643245 |
T |
|
| Q |
201 |
tgtaggcaaatgttagtaagtgggtgattatgtcaattttcaagatttgaatcttaagcctctataaaactcgtttaatacccattattttagctatt |
298 |
Q |
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| T |
48643246 |
tgtaggcaaatgttagtaagtgggtgattatgtcaattttcaagatttgaatcttaagcctctataaaactcgtttaatacccattattttagctatt |
48643343 |
T |
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Back To:
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 27147527 - 27147479
Alignment:
| Q |
192 |
actttcttttgtaggcaaatgttagtaagtgggtgattatgtcaatttt |
240 |
Q |
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| T |
27147527 |
acttttttttataggcaaatgttagtaagttagtgattatgttaatttt |
27147479 |
T |
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