View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9526_low_21 (Length: 255)

Name: NF9526_low_21
Description: NF9526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9526_low_21
NF9526_low_21
[»] chr2 (2 HSPs)
chr2 (1-238)||(31464629-31464868)
chr2 (50-101)||(14570513-14570564)
[»] chr3 (4 HSPs)
chr3 (44-148)||(39279719-39279823)
chr3 (60-113)||(8091258-8091311)
chr3 (60-100)||(8091140-8091180)
chr3 (64-104)||(25116531-25116571)
[»] chr5 (3 HSPs)
chr5 (51-104)||(34583692-34583745)
chr5 (54-104)||(10478316-10478366)
chr5 (56-105)||(18898608-18898657)
[»] chr8 (1 HSPs)
chr8 (50-105)||(6019567-6019622)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 31464868 - 31464629
Alignment:
Q  1 ttggattagctttgtcttcttcagaatcacaatgttccaatttgcaaacctacactttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31464868 ttggattagctttgtcttcttcagaatcacaatgttccaatttgcaaacctacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcatcaaa 31464769  T
Q  101 ctcacagtgattttaaatctgcatttggactatataaactcattctcatcctcctttcctctgagaactggagggtttacac--nnnnnnnntatctccc 198  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||          ||||||||    
T  31464768 ctcatagtgattttaaatctgcatctggactatataaactcattctcatcctcctttcctctgagaactggagggttaacacaaaaaaaaaatatctccc 31464669  T
Q  199 aacaattaaaccttccttgttaaatcagcatggataacat 238  Q
    || |||||||||||||||||||||||||||||||||||||    
T  31464668 aataattaaaccttccttgttaaatcagcatggataacat 31464629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 14570564 - 14570513
Alignment:
Q  50 ctacactttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaac 101  Q
    ||||| |||||||||| |||||||||| | ||||||||||||||||||||||    
T  14570564 ctacaatttagaactttaacaaaatcaacgtgtcaccgtgatttcatcaaac 14570513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 39279719 - 39279823
Alignment:
Q  44 gcaaacctacactttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaactcacagtgattttaaatctgcatttggactatataaactcat 143  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| ||||||  |||| |||| | |||||||||||| ||||    
T  39279719 gcaaaactacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcgtcaaaatcaccgtgattccaaatatgcactaggactatataaattcat 39279818  T
Q  144 tctca 148  Q
    |||||    
T  39279819 tctca 39279823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 8091311 - 8091258
Alignment:
Q  60 gaacttcaacaaaatcaccttgtcaccgtgatttcatcaaactcacagtgattt 113  Q
    ||||||||||||||||||  ||||||||||||||| ||||| |||  |||||||    
T  8091311 gaacttcaacaaaatcacagtgtcaccgtgatttcttcaaattcaatgtgattt 8091258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 8091180 - 8091140
Alignment:
Q  60 gaacttcaacaaaatcaccttgtcaccgtgatttcatcaaa 100  Q
    ||||||||||||||||||  ||||||||||||||| |||||    
T  8091180 gaacttcaacaaaatcacagtgtcaccgtgatttcttcaaa 8091140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 25116571 - 25116531
Alignment:
Q  64 ttcaacaaaatcaccttgtcaccgtgatttcatcaaactca 104  Q
    |||||||||||||| ||||||  ||||||||||||||||||    
T  25116571 ttcaacaaaatcacgttgtcagtgtgatttcatcaaactca 25116531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 34583745 - 34583692
Alignment:
Q  51 tacactttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaactca 104  Q
    ||||||||||||||||||| |||||||  ||||||||| ||| |||||||||||    
T  34583745 tacactttagaacttcaacgaaatcacgatgtcaccgtaattacatcaaactca 34583692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 10478316 - 10478366
Alignment:
Q  54 actttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaactca 104  Q
    ||||| ||||||||||||||||||  || ||||||||||| ||||||||||    
T  10478316 actttggaacttcaacaaaatcacggtggcaccgtgattttatcaaactca 10478366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 18898657 - 18898608
Alignment:
Q  56 tttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaactcac 105  Q
    |||||| ||||||||||||||   |||||||||||||||||||| |||||    
T  18898657 tttagagcttcaacaaaatcaaggtgtcaccgtgatttcatcaagctcac 18898608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 6019622 - 6019567
Alignment:
Q  50 ctacactttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaactcac 105  Q
    |||||||||| ||||||||||||||||| ||||||||  |||||| || |||||||    
T  6019622 ctacactttataacttcaacaaaatcacgttgtcaccacgatttcgtccaactcac 6019567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University