View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9526_low_24 (Length: 250)
Name: NF9526_low_24
Description: NF9526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9526_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 39849391 - 39849624
Alignment:
| Q |
1 |
acatgttatatgtatcatatgtgattgagttactagtcttcggtagaccatttatggttggtttatttgttcatcaaatgcaatgcatcgaatatttact |
100 |
Q |
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| T |
39849391 |
acatgttatatgtatcatatgtgattgagttactagtcttcggtagaccatttatggttggtttatttgttcatcaaatgcaatgcattgaatatttact |
39849490 |
T |
|
| Q |
101 |
ttcctctctactcctgctgaatctgattgtgatgcacattcatctttgttgtaggtatgatggctaaaatgagcattactacggcatttggattagcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39849491 |
ttcctctctactcctgctgaatctgattgtgatgcacattcatctttgttgtaggtatgatggctaaaatgagcattactacggcatttggattagcttc |
39849590 |
T |
|
| Q |
201 |
ttcacattccttcaagattcttaagacatgcata |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
39849591 |
ttcacattccttcaagattcttaagacatgcata |
39849624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 33973356 - 33973168
Alignment:
| Q |
36 |
gtcttcggtagaccatttatggttggtttatttgttcatcaaatgcaatgcatcgaatatttactttcctctctactcctgctgaatctgattgtgatgc |
135 |
Q |
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| T |
33973356 |
gtcttcagtagactacttacgattggtttatgtgttcatcaaattcaatacatcaagtatttactttcctctctactcctgatgtccctaattgtaatgc |
33973257 |
T |
|
| Q |
136 |
acattcatctt--tgttgtaggtatgatggctaaaatgagcattactacggcatttggattagcttcttcacattccttcaagattctta |
223 |
Q |
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| T |
33973256 |
acatttattctccacctgtaggaatgatggataaactgagca-tgctatggcatttggatcagcttcttcacattcattcaagattctta |
33973168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 32201953 - 32202033
Alignment:
| Q |
142 |
atctttgttgtaggtatgatggctaaaatgagcattactacggcatttggattagcttcttcacattccttcaagattctt |
222 |
Q |
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|||||||||||||| |||||||||||||| ||||| ||| || |||||||||||||||||||||||| |||||||||||| |
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| T |
32201953 |
atctttgttgtaggaatgatggctaaaataagcatcgctatggtatttggattagcttcttcacattcattcaagattctt |
32202033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 3981428 - 3981494
Alignment:
| Q |
37 |
tcttcggtagaccatttatggttggtttatttgttcatcaaatgcaatgcatcgaatatttactttc |
103 |
Q |
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||||| |||||| | |||||||||||||||||||| | || |||||||||||| ||||||||||||| |
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| T |
3981428 |
tcttcagtagactacttatggttggtttatttgttaaccatatgcaatgcatctaatatttactttc |
3981494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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