View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9526_low_3 (Length: 488)
Name: NF9526_low_3
Description: NF9526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9526_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 470
Target Start/End: Complemental strand, 22573811 - 22573360
Alignment:
| Q |
19 |
gataagaatgggaagatcaaagaacaaggtggtgtgctggtaaaacattgtgttgatgaaacaattgtgagagatcaaaagaacaaggtggtggcgaggt |
118 |
Q |
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| T |
22573811 |
gataagaatgggaagatcaaagaacaaggtggtgtgctggtaaaacattgtgttgatgaaacaattgtgagagatcaaaagaacaaggtggtggcgaggt |
22573712 |
T |
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| Q |
119 |
taaagattccgaatggcctagtcattcaaaattcacaagcttccaatcaacctgcctccaatgatgataatgaagagaacaacaacactggtgaagatga |
218 |
Q |
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| T |
22573711 |
taaagattccgaatggcctagtcattcaaaattcacaagcttccaatcaacctgcctccaatgatgataatgaagagaacaacaacactggtgaagatga |
22573612 |
T |
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| Q |
219 |
tgaaacagatgagaacaacaacctgcctcatgaattagggttaaatgttgttcgagatttcgatttgaatgagctgccagtggatgatgatgcagatgaa |
318 |
Q |
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| T |
22573611 |
tgaaacagataagaacaacaacctgcctcatgaattagggttaaatgttgttcgagatttcgatttgaatgagctgccagtggaagatgatgcagatgaa |
22573512 |
T |
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| Q |
319 |
accgcccattagtgtttctttttgtttttaatgttgaatgagaatgatattttgctttttctgatggataaagttgaagttgtcatgtaatttattttat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
22573511 |
accgcccattagtgtttctttttgtttttaatgttgaatgagaatgatattttgctttttctgatggatagagttgaagttgtcatgtaatttgttttat |
22573412 |
T |
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| Q |
419 |
tgaacattttgcttgtaagatatgaaataaattttagattttctttagtgat |
470 |
Q |
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| T |
22573411 |
tgaacattttgcttgtaagatatgaaataaattttagatttttcttagtgat |
22573360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 421
Target Start/End: Complemental strand, 22563942 - 22563871
Alignment:
| Q |
349 |
atgttgaatgagaatgatattttgctttttctgatggataaagttgaagttgtcatgtaatttattttattga |
421 |
Q |
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|||||||| |||| |||||||| ||||||||||||||||||| |||||||| ||||||| || | ||||||| |
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| T |
22563942 |
atgttgaa-gagagtgatatttagctttttctgatggataaacctgaagttgccatgtaaattgtcttattga |
22563871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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