View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9526_low_33 (Length: 226)
Name: NF9526_low_33
Description: NF9526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9526_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 208
Target Start/End: Original strand, 45197975 - 45198178
Alignment:
| Q |
5 |
ggaggagcagagagaggcaatagaccgacaaacgtccacggtcctcctgaactctccttgcttttttctggcacttcctaaaaagtatgcataattcctc |
104 |
Q |
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| T |
45197975 |
ggaggatcaaagagaggcaatagaccgacaaacgtccacggtcctcctgaactctccttgcttttttctggcacttcctaaaaagtatgcataattcctc |
45198074 |
T |
|
| Q |
105 |
ataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttacttgtttgccaacagcaagggaacggagaccgcgttc |
204 |
Q |
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| T |
45198075 |
ataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaataaaagcttacttgtttgccaacagcaagggaacggagaccgcgttc |
45198174 |
T |
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| Q |
205 |
agca |
208 |
Q |
| |
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|||| |
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| T |
45198175 |
agca |
45198178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 84 - 208
Target Start/End: Complemental strand, 30340921 - 30340797
Alignment:
| Q |
84 |
aaaaagtatgcataattcctcataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttacttgtttgccaacagc |
183 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30340921 |
aaaaaatatgcataattcctcataaaaatttattttgattcattcaatcataagtcatcattaataagaagtaagaaaagcttacttgtttaccaacagc |
30340822 |
T |
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| Q |
184 |
aagggaacggagaccgcgttcagca |
208 |
Q |
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||||||| ||||| |||||||||| |
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| T |
30340821 |
aagggaagagagactgcgttcagca |
30340797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 84 - 208
Target Start/End: Original strand, 18988851 - 18988975
Alignment:
| Q |
84 |
aaaaagtatgcataattcctcataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttacttgtttgccaacagc |
183 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
18988851 |
aaaaaatatgcataattcctcataaaaatttattttgattcattcaatccaaagtcatcattaataagaagtaagaaaagcttatttgtttaccaacagc |
18988950 |
T |
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| Q |
184 |
aagggaacggagaccgcgttcagca |
208 |
Q |
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||||||| ||||| | |||||||| |
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| T |
18988951 |
aagggaagagagactgtgttcagca |
18988975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 84 - 208
Target Start/End: Complemental strand, 23916671 - 23916548
Alignment:
| Q |
84 |
aaaaagtatgcataattcctcataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttacttgtttgccaacagc |
183 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
23916671 |
aaaaaatatgcataattcctcataaaat-ttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttatttgtttaccaacagc |
23916573 |
T |
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| Q |
184 |
aagggaacggagaccgcgttcagca |
208 |
Q |
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||||||| ||||| |||||||||| |
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| T |
23916572 |
aagggaagagagactgcgttcagca |
23916548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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