View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9526_low_5 (Length: 443)

Name: NF9526_low_5
Description: NF9526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9526_low_5
NF9526_low_5
[»] chr6 (10 HSPs)
chr6 (153-428)||(31273357-31273636)
chr6 (60-153)||(31272892-31272985)
chr6 (14-60)||(6180623-6180669)
chr6 (14-60)||(17335193-17335239)
chr6 (14-60)||(24813850-24813896)
chr6 (14-55)||(17192412-17192453)
chr6 (15-60)||(29362191-29362236)
chr6 (15-60)||(32754882-32754927)
chr6 (16-60)||(15272935-15272979)
chr6 (32-60)||(29362148-29362176)
[»] chr1 (11 HSPs)
chr1 (153-428)||(26214829-26215107)
chr1 (222-353)||(6532060-6532190)
chr1 (14-60)||(26617483-26617529)
chr1 (14-60)||(6504727-6504773)
chr1 (14-53)||(37596740-37596779)
chr1 (14-60)||(5564799-5564845)
chr1 (14-53)||(52213981-52214020)
chr1 (14-60)||(6505232-6505278)
chr1 (14-60)||(6810559-6810605)
chr1 (15-60)||(52214526-52214571)
chr1 (220-372)||(9802601-9802753)
[»] chr3 (7 HSPs)
chr3 (187-368)||(23374147-23374328)
chr3 (65-152)||(23375931-23376020)
chr3 (14-60)||(13935234-13935280)
chr3 (16-60)||(38929543-38929587)
chr3 (14-60)||(38852577-38852623)
chr3 (14-60)||(34020279-34020325)
chr3 (15-60)||(50681259-50681304)
[»] chr2 (19 HSPs)
chr2 (223-326)||(4941677-4941780)
chr2 (223-326)||(5026757-5026860)
chr2 (223-338)||(16157831-16157946)
chr2 (14-60)||(2940122-2940168)
chr2 (14-60)||(31076182-31076228)
chr2 (14-60)||(36067121-36067167)
chr2 (15-60)||(38816046-38816091)
chr2 (14-53)||(22962590-22962629)
chr2 (14-53)||(32525823-32525862)
chr2 (14-60)||(1858503-1858549)
chr2 (14-60)||(31076734-31076780)
chr2 (14-60)||(44425687-44425733)
chr2 (14-60)||(2940670-2940716)
chr2 (14-60)||(19975300-19975346)
chr2 (14-60)||(34788885-34788931)
chr2 (14-60)||(36067638-36067684)
chr2 (15-53)||(39317631-39317669)
chr2 (14-60)||(42158901-42158947)
chr2 (23-51)||(2940071-2940099)
[»] chr8 (18 HSPs)
chr8 (14-60)||(764989-765035)
chr8 (14-60)||(28937017-28937063)
chr8 (14-60)||(28967823-28967869)
chr8 (14-60)||(28990488-28990534)
chr8 (15-60)||(22201825-22201870)
chr8 (14-60)||(38781296-38781342)
chr8 (14-60)||(9513200-9513246)
chr8 (14-60)||(37707393-37707439)
chr8 (15-60)||(764447-764492)
chr8 (15-60)||(36181569-36181614)
chr8 (14-60)||(38781832-38781878)
chr8 (14-51)||(14036677-14036714)
chr8 (157-198)||(15758455-15758496)
chr8 (14-51)||(28937605-28937642)
chr8 (14-51)||(28967238-28967275)
chr8 (14-51)||(28991072-28991109)
chr8 (32-60)||(764947-764975)
chr8 (23-51)||(22201774-22201802)
[»] chr7 (9 HSPs)
chr7 (14-60)||(8295617-8295663)
chr7 (14-60)||(47379111-47379157)
chr7 (15-60)||(31902097-31902142)
chr7 (14-53)||(1964069-1964108)
chr7 (14-60)||(28882380-28882426)
chr7 (14-60)||(42941505-42941551)
chr7 (14-52)||(2094511-2094549)
chr7 (15-60)||(37399417-37399462)
chr7 (24-60)||(42793093-42793129)
[»] scaffold0341 (2 HSPs)
scaffold0341 (14-60)||(6410-6456)
scaffold0341 (14-60)||(6910-6956)
[»] chr5 (16 HSPs)
chr5 (14-60)||(13359833-13359879)
chr5 (14-60)||(35894179-35894225)
chr5 (14-60)||(42257327-42257373)
chr5 (14-60)||(42501187-42501233)
chr5 (14-60)||(43109490-43109536)
chr5 (14-55)||(28864183-28864224)
chr5 (15-60)||(39599407-39599452)
chr5 (14-60)||(1628901-1628947)
chr5 (15-53)||(12216162-12216200)
chr5 (14-53)||(1629438-1629477)
chr5 (14-60)||(35894726-35894772)
chr5 (14-60)||(39599958-39600004)
chr5 (14-60)||(42501735-42501781)
chr5 (14-52)||(42866578-42866616)
chr5 (15-60)||(13360352-13360397)
chr5 (32-60)||(28863340-28863368)
[»] chr4 (9 HSPs)
chr4 (14-60)||(51928364-51928410)
chr4 (14-60)||(34268322-34268368)
chr4 (14-60)||(45753328-45753374)
chr4 (14-60)||(38739293-38739339)
chr4 (14-60)||(41551231-41551277)
chr4 (14-60)||(50772822-50772868)
chr4 (15-60)||(34267801-34267846)
chr4 (15-60)||(40834702-40834747)
chr4 (14-51)||(45752789-45752826)
[»] scaffold0508 (1 HSPs)
scaffold0508 (15-59)||(393-437)
[»] scaffold0045 (1 HSPs)
scaffold0045 (14-60)||(75296-75342)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-119; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 153 - 428
Target Start/End: Original strand, 31273357 - 31273636
Alignment:
Q  153 taacaatgcttttct-gcatgatgagttacaagaagatgtttacatgcagttgccacttggtatcacgacatctaaacccaatcaagtttgataattggt 251  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  31273357 taacaatgctttttttgcatggtgagttacaagaagatgtttacatgcagttaccacttggtatcactacatctaaacccaatcaagtttgataattggt 31273456  T
Q  252 taaatccctctatgcattgaagcaagcctctagaaaatggtatgaaaggctcacctctttgttattggctcaaggatacaagcatgctaactcatatcat 351  Q
    |||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31273457 taaatccctctatggattgaagcgagcctccagaaaatggtatgaaaggctcacctctttgttattggctcaaggatacaagcatgctaactcatatcat 31273556  T
Q  352 tcactatttaccaaatcttcagctactacattcactgtcattttggtctatata---gatattattttagcaggaaattc 428  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||| ||   |||||||||||||||||||||||    
T  31273557 tcactatttaccaaatcttcagctactacattcaccatcattttggtctatgtagatgatattattttagcaggaaattc 31273636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 31272892 - 31272985
Alignment:
Q  60 tcatatctcaaatcaatcatcatctcctactaattctactgattttactagctatcatgttattgattctctttcatataataaattgtctaat 153  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31272892 tcatgtctcaaatcaatcatcatctcatactaattctactgattttactagctatcatgttactgattctctttcatataataaattgtctaat 31272985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 6180669 - 6180623
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  6180669 caaaatcccgattcaatcaaaatagagggggtaaaattccgagtttt 6180623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 17335239 - 17335193
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  17335239 caaaatcccgattcaatcaaaatagagggggtaaaattccgagtttt 17335193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 24813896 - 24813850
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||    
T  24813896 caaaatcccgattcaattaaaatagagggggtaaaattccgaatttt 24813850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 17192412 - 17192453
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccga 55  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  17192412 caaaatcccgattcaatcaaaatagagggggtaaaattccga 17192453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 29362191 - 29362236
Alignment:
Q  15 aaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  29362191 aaaatcccgattcaatcaaaatagagggggtaaaattccgagtttt 29362236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 32754882 - 32754927
Alignment:
Q  15 aaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  32754882 aaaatccagattcaatcaaaatagagggggtaaaattccgagtttt 32754927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 15272979 - 15272935
Alignment:
Q  16 aaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||| |||||||||||||||||| |||||||||||||| ||||    
T  15272979 aaatcccgattcaatcaaaatagagagggtaaaattccgagtttt 15272935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 29362148 - 29362176
Alignment:
Q  32 aaaatagagggggtaaaattccgaatttt 60  Q
    |||||||||||||||||||||||||||||    
T  29362148 aaaatagagggggtaaaattccgaatttt 29362176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 153 - 428
Target Start/End: Original strand, 26214829 - 26215107
Alignment:
Q  153 taacaatgcttttctgcatgatgagttacaagaagatgtttacatgcagttgccacttggtatcacgacatctaaacccaatcaagtttgataattggtt 252  Q
    |||||||||||||||||||| ||| || |||||| || | ||||||||||| |||| ||||||||| ||||||||||| |||||||||||  |||||||     
T  26214829 taacaatgcttttctgcatggtgaattgcaagaaaatttctacatgcagttaccacctggtatcactacatctaaacctaatcaagtttgtaaattggta 26214928  T
Q  253 aaatccctctatgcattgaagcaagcctctagaaaatggtatgaaaggctcacctctttgttattggctcaaggatacaagcatgctaactcatatcatt 352  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||    
T  26214929 aaatccctctatggattgaagcaagcctctagaaaatggtatgaaaggctcacctctttgttactggctcaaggttacaagcatgctaactcagatcatt 26215028  T
Q  353 cactatttaccaaatcttcagctactacattcactgtcattttggtctatata---gatattattttagcaggaaattc 428  Q
    |||| ||||||||||| ||||||||| |||||||| || ||||||| ||| ||   ||||||||||||||||| |||||    
T  26215029 cactctttaccaaatcatcagctactgcattcactatccttttggtttatgtagatgatattattttagcaggcaattc 26215107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 222 - 353
Target Start/End: Original strand, 6532060 - 6532190
Alignment:
Q  222 atctaaacccaatcaagtttgataattggttaaatccctctatgcattgaagcaagcctctagaaaatggtatgaaaggctcacctctttgttattggct 321  Q
    ||||||||| || ||||||||  ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | | || ||||| ||| ||| |    
T  6532060 atctaaacctaa-caagtttgcaaattggttaaatccctctatggattgaaacaagcctctagaaaatggtatgaaaagttaacatctttattactggtt 6532158  T
Q  322 caaggatacaagcatgctaactcatatcattc 353  Q
    ||||| ||||||||||| |||||| |||||||    
T  6532159 caaggctacaagcatgccaactcagatcattc 6532190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 26617483 - 26617529
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  26617483 caaaatcccgattcaatcaaaatagagggggtaaaattccgaatttt 26617529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 6504773 - 6504727
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  6504773 caaaatcccgattcaatcaaaatagagggggtaaaattccgagtttt 6504727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 37596779 - 37596740
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattcc 53  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  37596779 caaaatcccgattcaatcaaaatagagggggtaaaattcc 37596740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 5564799 - 5564845
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||| | ||||||||||||||||||||||||||||||||| ||||    
T  5564799 caaaattccgattcaatcaaaatagagggggtaaaattccgagtttt 5564845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 52214020 - 52213981
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattcc 53  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  52214020 caaaatcccaattcaatcaaaatagagggggtaaaattcc 52213981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 6505232 - 6505278
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| || ||||| |||||||||||||||||||||||| ||||    
T  6505232 caaaatccagaatcaataaaaatagagggggtaaaattccgagtttt 6505278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 6810605 - 6810559
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| |||||||| ||||||||||| |||||||||||| ||||    
T  6810605 caaaatcccgattcaattaaaatagagggagtaaaattccgagtttt 6810559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 52214526 - 52214571
Alignment:
Q  15 aaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    ||||||| || ||||| |||||||||||||||||||||||| ||||    
T  52214526 aaaatccagaatcaataaaaatagagggggtaaaattccgagtttt 52214571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 372
Target Start/End: Complemental strand, 9802753 - 9802601
Alignment:
Q  220 acatctaaacccaatcaagtttgataattggttaaatccctctatgcattgaagcaagcctctagaaaatggtatgaaaggctcacctctttgttattgg 319  Q
    ||||| ||||| |||||||||||  || || ||||||| ||||||| ||| ||||||||    ||||| |||||||| | |||||| || ||  |  |||    
T  9802753 acatccaaaccaaatcaagtttgcaaactgattaaatctctctatggattaaagcaagctagcagaaagtggtatgagaagctcacttcattacttgtgg 9802654  T
Q  320 ctcaaggatacaagcatgctaactcatatcattcactatttaccaaatcttca 372  Q
    ||||||| | |||||| || || |||||||| || ||||| ||||||| ||||    
T  9802653 ctcaaggtttcaagcaagcaaattcatatcactctctattcaccaaattttca 9802601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 187 - 368
Target Start/End: Complemental strand, 23374328 - 23374147
Alignment:
Q  187 gatgtttacatgcagttgccacttggtatcacgacatctaaacccaatcaagtttgataattggttaaatccctctatgcattgaagcaagcctctagaa 286  Q
    |||||| ||||||| || |||| ||||||||| ||||  ||||| |||| ||||||  ||||||||||||||||||||| ||| ||||||||||||||||    
T  23374328 gatgttaacatgcaattaccacctggtatcactacattgaaacctaatctagtttgtaaattggttaaatccctctatggattaaagcaagcctctagaa 23374229  T
Q  287 aatggtatgaaaggctcacctctttgttattggctcaaggatacaagcatgctaactcatatcattcactatttaccaaatc 368  Q
    ||||||||||||||||||||||||| ||  |||||||||| ||||||||||||||| |||| |||||||| |||||||||||    
T  23374228 aatggtatgaaaggctcacctctttattgctggctcaaggttacaagcatgctaacccataccattcactttttaccaaatc 23374147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 23376020 - 23375931
Alignment:
Q  65 tctcaaatcaatcatcatctcctactaattctac--tgattttactagctatcatgttattgattctctttcatataataaattgtctaa 152  Q
    |||||||||||||||| |||||||||||||||||  |||||||||||| |||| | ||| |||||||| ||||||||||||| |||||||    
T  23376020 tctcaaatcaatcatcttctcctactaattctaccatgattttactagttatcttattactgattctcattcatataataaactgtctaa 23375931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 13935280 - 13935234
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||    
T  13935280 caaaatcctgattcaatcaaaatagaaggggtaaaattccaaatttt 13935234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 38929543 - 38929587
Alignment:
Q  16 aaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||| |||||||| |||||||||||||||||||||||||||||    
T  38929543 aaatcccgattcaataaaaatagagggggtaaaattccgaatttt 38929587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 38852623 - 38852577
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||| | ||||||||||||||||||||||||||||||||| ||||    
T  38852623 caaaattccgattcaatcaaaatagagggggtaaaattccgagtttt 38852577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 34020279 - 34020325
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||| ||||||||| ||| ||||    
T  34020279 caaaatccagattcaatcaaaatagaggaggtaaaatttcgagtttt 34020325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 50681304 - 50681259
Alignment:
Q  15 aaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    ||||||| ||||||||||||||||||||| ||| ||||||| ||||    
T  50681304 aaaatccagattcaatcaaaatagaggggataatattccgagtttt 50681259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 223 - 326
Target Start/End: Complemental strand, 4941780 - 4941677
Alignment:
Q  223 tctaaacccaatcaagtttgataattggttaaatccctctatgcattgaagcaagcctctagaaaatggtatgaaaggctcacctctttgttattggctc 322  Q
    |||||||| |||||||||||  ||||| ||||||| |||||||  || ||||| |||  ||||||||||||||||||||||||  |||| ||| ||||||    
T  4941780 tctaaacctaatcaagtttgcaaattgattaaatctctctatggtttaaagcaggccagtagaaaatggtatgaaaggctcactgctttattactggctc 4941681  T
Q  323 aagg 326  Q
    ||||    
T  4941680 aagg 4941677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 223 - 326
Target Start/End: Complemental strand, 5026860 - 5026757
Alignment:
Q  223 tctaaacccaatcaagtttgataattggttaaatccctctatgcattgaagcaagcctctagaaaatggtatgaaaggctcacctctttgttattggctc 322  Q
    |||||||| |||||||||||  ||||| ||||||| |||||||  || ||||| |||  ||||||||||||||||||||||||  |||| ||| ||||||    
T  5026860 tctaaacctaatcaagtttgcaaattgattaaatctctctatggtttaaagcaggccagtagaaaatggtatgaaaggctcactgctttattactggctc 5026761  T
Q  323 aagg 326  Q
    ||||    
T  5026760 aagg 5026757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 223 - 338
Target Start/End: Original strand, 16157831 - 16157946
Alignment:
Q  223 tctaaacccaatcaagtttgataattggttaaatccctctatgcattgaagcaagcctctagaaaatggtatgaaaggctcacctctttgttattggctc 322  Q
    |||||||| |||| ||||||  ||||||| ||||| |||||||  || ||||| |||  |||||||||||||||||||||| |  |||| ||| ||||||    
T  16157831 tctaaacctaatcgagtttgtaaattggtaaaatctctctatggtttaaagcaggccagtagaaaatggtatgaaaggctcgctgctttattactggctc 16157930  T
Q  323 aaggatacaagcatgc 338  Q
    ||||||| ||||||||    
T  16157931 aaggatataagcatgc 16157946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 2940168 - 2940122
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||    
T  2940168 caaaatcccgattcaatcaaattagagggggtaaaattccgaatttt 2940122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 31076228 - 31076182
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  31076228 caaaatcccgattcaatcaaaatagagggggtaaaattccgagtttt 31076182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 36067167 - 36067121
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  36067167 caaaatcccgattcaatcaaaatagagggggtaaaattccgagtttt 36067121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 38816046 - 38816091
Alignment:
Q  15 aaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  38816046 aaaatcccgattcaatcaaaatagagggggtaaaattccgagtttt 38816091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 22962590 - 22962629
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattcc 53  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  22962590 caaaatcccgattcaatcaaaatagagggggtaaaattcc 22962629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 32525823 - 32525862
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattcc 53  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  32525823 caaaatcccgattcaatcaaaatagagggggtaaaattcc 32525862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 1858549 - 1858503
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||||    
T  1858549 caaaatccaaattcaatcaaaatagagggggtaaaattccgagtttt 1858503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 31076734 - 31076780
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| || ||||| |||||||||||||||||||||||||||||    
T  31076734 caaaatccagaatcaataaaaatagagggggtaaaattccgaatttt 31076780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 44425733 - 44425687
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||| | ||||||||||||||||||||||||||||||||| ||||    
T  44425733 caaaattccgattcaatcaaaatagagggggtaaaattccgagtttt 44425687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 2940670 - 2940716
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| || ||||| |||||||||||||||||||||||| ||||    
T  2940670 caaaatccagaatcaataaaaatagagggggtaaaattccgagtttt 2940716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 19975300 - 19975346
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||| | ||||||||||||||||||| ||||||||||||| ||||    
T  19975300 caaaattccgattcaatcaaaatagaggaggtaaaattccgagtttt 19975346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 34788931 - 34788885
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| || ||||| |||||||||||||||||||||||| ||||    
T  34788931 caaaatccagaatcaataaaaatagagggggtaaaattccgagtttt 34788885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 36067638 - 36067684
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| || ||||| |||||||||||||||||||||||| ||||    
T  36067638 caaaatccagaatcaataaaaatagagggggtaaaattccgagtttt 36067684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 39317669 - 39317631
Alignment:
Q  15 aaaatcctgattcaatcaaaatagagggggtaaaattcc 53  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  39317669 aaaatccagaatcaatcaaaatagagggggtaaaattcc 39317631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 42158901 - 42158947
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||| | ||||||||||||||||||| ||||||||||||| ||||    
T  42158901 caaaattccgattcaatcaaaatagaggaggtaaaattccgagtttt 42158947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 2940099 - 2940071
Alignment:
Q  23 gattcaatcaaaatagagggggtaaaatt 51  Q
    |||||||||||||||||||||||||||||    
T  2940099 gattcaatcaaaatagagggggtaaaatt 2940071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 764989 - 765035
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  764989 caaaatcccgattcaatcaaaatagagggggtaaaattccgaatttt 765035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 28937063 - 28937017
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  28937063 caaaatcccgattcaatcaaaatagagggggtaaaattccgaatttt 28937017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 28967823 - 28967869
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  28967823 caaaatcccgattcaatcaaaatagagggggtaaaattccgaatttt 28967869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 28990534 - 28990488
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  28990534 caaaatcccgattcaatcaaaatagagggggtaaaattccgaatttt 28990488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 22201870 - 22201825
Alignment:
Q  15 aaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  22201870 aaaatcccgattcaatcaaaatagagggggtaaaattccgaatttt 22201825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 38781342 - 38781296
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  38781342 caaaatcccgattcaatcaaaatagagggggtaaaattccgagtttt 38781296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 9513246 - 9513200
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||||    
T  9513246 caaaatccaaattcaatcaaaatagagggggtaaaattccgagtttt 9513200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 37707439 - 37707393
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  37707439 caaaatcccgattcaatcaaaataaagggggtaaaattccgagtttt 37707393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 764492 - 764447
Alignment:
Q  15 aaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    ||||||| || ||||| |||||||||||||||||||||||||||||    
T  764492 aaaatccagaatcaataaaaatagagggggtaaaattccgaatttt 764447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 36181569 - 36181614
Alignment:
Q  15 aaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    ||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  36181569 aaaatcccgattcaatcaaaatagaggggttaaaattccgattttt 36181614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 38781832 - 38781878
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| || ||||| |||||||||||||||||||||||| ||||    
T  38781832 caaaatccagaatcaataaaaatagagggggtaaaattccgagtttt 38781878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 14036714 - 14036677
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaatt 51  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  14036714 caaaatcccgattcaatcaaaatagggggggtaaaatt 14036677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 15758455 - 15758496
Alignment:
Q  157 aatgcttttctgcatgatgagttacaagaagatgtttacatg 198  Q
    ||||| ||||| |||| |||||||||||||||||||||||||    
T  15758455 aatgcatttcttcatggtgagttacaagaagatgtttacatg 15758496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 28937605 - 28937642
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaatt 51  Q
    |||||| | |||||||||||||||||||||||||||||    
T  28937605 caaaattcagattcaatcaaaatagagggggtaaaatt 28937642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 28967275 - 28967238
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaatt 51  Q
    |||||| | |||||||||||||||||||||||||||||    
T  28967275 caaaattcagattcaatcaaaatagagggggtaaaatt 28967238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 28991072 - 28991109
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaatt 51  Q
    |||||| | |||||||||||||||||||||||||||||    
T  28991072 caaaattcagattcaatcaaaatagagggggtaaaatt 28991109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 764947 - 764975
Alignment:
Q  32 aaaatagagggggtaaaattccgaatttt 60  Q
    |||||||||||||||||||||||||||||    
T  764947 aaaatagagggggtaaaattccgaatttt 764975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 22201802 - 22201774
Alignment:
Q  23 gattcaatcaaaatagagggggtaaaatt 51  Q
    |||||||||||||||||||||||||||||    
T  22201802 gattcaatcaaaatagagggggtaaaatt 22201774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 8295617 - 8295663
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  8295617 caaaatcctgattcaatcaaaatagagggggtaaaattccgagtttt 8295663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 47379111 - 47379157
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  47379111 caaaatcccgattcaatcaaaatagagggggtaaaattccgagtttt 47379157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 31902142 - 31902097
Alignment:
Q  15 aaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||    
T  31902142 aaaatcccgattcaatcaaaatagagggggtaaaattccaaatttt 31902097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 1964069 - 1964108
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattcc 53  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  1964069 caaaattctgattcaatcaaaatagagggggtaaaattcc 1964108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 28882426 - 28882380
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||||    
T  28882426 caaaatcccaattcaatcaaaatagagggggtaaaattccgagtttt 28882380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 42941551 - 42941505
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||| | ||||||||||||||||||||||||||||||| ||||||    
T  42941551 caaaattccgattcaatcaaaatagagggggtaaaattccaaatttt 42941505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 2094511 - 2094549
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattc 52  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  2094511 caaaatcccgattcaatcaaaatagaaggggtaaaattc 2094549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 37399417 - 37399462
Alignment:
Q  15 aaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    ||||||| || ||||||||||||| |||||||||||||||| ||||    
T  37399417 aaaatccagaatcaatcaaaatagggggggtaaaattccgagtttt 37399462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 42793093 - 42793129
Alignment:
Q  24 attcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  42793093 attcaatcaaattagagggggtaaaattctgaatttt 42793129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 6456 - 6410
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  6456 caaaatcccgattcaatcaaaatagagggggtaaaattccgagtttt 6410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 6910 - 6956
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| || ||||| |||||||||||||||||||||||| ||||    
T  6910 caaaatccagaatcaataaaaatagagggggtaaaattccgagtttt 6956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 13359879 - 13359833
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  13359879 caaaatcccgattcaatcaaaatagagggggtaaaattccgagtttt 13359833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 35894225 - 35894179
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  35894225 caaaatcccgattcaatcaaaatagagggggtaaaattccgagtttt 35894179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 42257373 - 42257327
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  42257373 caaaatcccgattcaatcaaaatagagggggtaaaattccgagtttt 42257327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 42501233 - 42501187
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||    
T  42501233 caaaattccgattcaatcaaaatagagggggtaaaattccgaatttt 42501187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 43109536 - 43109490
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  43109536 caaaatcccgattcaatcaaaatagagggggtaaaattccgagtttt 43109490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 28864183 - 28864224
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccga 55  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  28864183 caaaatcccgattcaatcaaaatagagggggtaaaattccga 28864224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 39599452 - 39599407
Alignment:
Q  15 aaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  39599452 aaaatcccgattcaatcaaaatagagggggtaaaattccgagtttt 39599407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 1628947 - 1628901
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||| | ||||||||||||||||||||||||||||||||| ||||    
T  1628947 caaaattccgattcaatcaaaatagagggggtaaaattccgagtttt 1628901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 12216162 - 12216200
Alignment:
Q  15 aaaatcctgattcaatcaaaatagagggggtaaaattcc 53  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  12216162 aaaatccagattcaatcaaaatagagggggtaaaattcc 12216200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 1629438 - 1629477
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattcc 53  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  1629438 caaaatcccaattcaatcaaaatagagggggtaaaattcc 1629477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 35894726 - 35894772
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| || ||||| |||||||||||||||||||||||| ||||    
T  35894726 caaaatccagaatcaataaaaatagagggggtaaaattccgagtttt 35894772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 39599958 - 39600004
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| || ||||| |||||||||||||||||||||||| ||||    
T  39599958 caaaatccagaatcaataaaaatagagggggtaaaattccgagtttt 39600004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 42501735 - 42501781
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| || ||||| |||||||||||||||||||||||| ||||    
T  42501735 caaaatccagaatcaataaaaatagagggggtaaaattccgagtttt 42501781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 42866578 - 42866616
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattc 52  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  42866578 caaaatcccgattcaatcaaaatatagggggtaaaattc 42866616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 13360352 - 13360397
Alignment:
Q  15 aaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    ||||||| || ||||| |||||||||||||||||||||||| ||||    
T  13360352 aaaatccagaatcaataaaaatagagggggtaaaattccgagtttt 13360397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 28863368 - 28863340
Alignment:
Q  32 aaaatagagggggtaaaattccgaatttt 60  Q
    |||||||||||||||||||||||||||||    
T  28863368 aaaatagagggggtaaaattccgaatttt 28863340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 51928364 - 51928410
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  51928364 caaaatccagattcaatcaaaatagagggggtaaaattccgagtttt 51928410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 34268322 - 34268368
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||||    
T  34268322 caaaatcccaattcaatcaaaatagagggggtaaaattccgagtttt 34268368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 45753328 - 45753374
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  45753328 caaaatcccgattcaatcaaaatagaggggataaaattccgagtttt 45753374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 38739339 - 38739293
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||| | ||||||||||||||||| ||||||||||||||| ||||    
T  38739339 caaaattccgattcaatcaaaatagaaggggtaaaattccgagtttt 38739293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 41551231 - 41551277
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||| | |||||||||||||| ||||||||||||||| |||||||    
T  41551231 caaaattccgattcaatcaaaattgagggggtaaaattctgaatttt 41551277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 50772868 - 50772822
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||| | ||||| ||||||||||||||||||||||||||| ||||    
T  50772868 caaaattcagattctatcaaaatagagggggtaaaattccgagtttt 50772822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 34267846 - 34267801
Alignment:
Q  15 aaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    ||||||| || ||||| |||||||||||||||||||||||| ||||    
T  34267846 aaaatccagaatcaataaaaatagagggggtaaaattccgagtttt 34267801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 40834702 - 40834747
Alignment:
Q  15 aaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||  |||||||||||||| ||||| ||||||||||||||||    
T  40834702 aaaatccatattcaatcaaaataaaggggataaaattccgaatttt 40834747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 45752826 - 45752789
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaatt 51  Q
    |||||| | |||||||||||||||||||||||||||||    
T  45752826 caaaattcagattcaatcaaaatagagggggtaaaatt 45752789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 393 - 437
Alignment:
Q  15 aaaatcctgattcaatcaaaatagagggggtaaaattccgaattt 59  Q
    |||||||  ||||||||||||||||||||||||||||||||||||    
T  393 aaaatcccaattcaatcaaaatagagggggtaaaattccgaattt 437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 75342 - 75296
Alignment:
Q  14 caaaatcctgattcaatcaaaatagagggggtaaaattccgaatttt 60  Q
    |||||||| |||||||||||||||||||  |||||||||| ||||||    
T  75342 caaaatcccgattcaatcaaaatagaggaagtaaaattccaaatttt 75296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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