View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9526_low_7 (Length: 441)
Name: NF9526_low_7
Description: NF9526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9526_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 424
Target Start/End: Complemental strand, 1176146 - 1175741
Alignment:
| Q |
13 |
tggtggtgttagggtcggagaaaggtgagaagatgacagagggttggaggcgcgaagaatgggggtggcggtggtggtgagtggtggtgttagtgatatg |
112 |
Q |
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| T |
1176146 |
tggtggtgttagggtcggagaaaggtgagaagatgacagagggttggaggcgcgaagaatgggg-tggcggtggtggtga----------------tatg |
1176064 |
T |
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| Q |
113 |
tggagatggagaaatgagagagaagagagcgaagggaaagactcgtgtttgtttttcttgcattgataaaataaataa----------taaaggccactg |
202 |
Q |
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| T |
1176063 |
tggagatggagaaatgagaaagaagagagcgaagggaaagactcgtgtttgtttttcttgcattgataaaataaataataaataataataaaggccactg |
1175964 |
T |
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| Q |
203 |
ttgctgtgtttttcttgcattaataaaatnnnnnnnntaataacaaatgccatctaggtgtgtgtatatgggtggtaggggaaagtgtgtgttcatgaat |
302 |
Q |
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| T |
1175963 |
ttgctgtgtttttcttgcattaataaaataaaaaaaataataacaaatgccatctaggtgtgtgtatatgggtggtaggggaaaatgtgtgttcatgaat |
1175864 |
T |
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| Q |
303 |
atttactcttata---atggtactagtgcaatggnnnnnnnncattggcaaaattacacagagatcgaagcaaacatagaagttaactaaaaataaaaac |
399 |
Q |
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| T |
1175863 |
atttactcttataatgatggtactagtgcaatggtttttttttattggcaaaatt--acagagatcgaagcaaacatagaagttaactaaaaatgaaaac |
1175766 |
T |
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| Q |
400 |
cttttctaatgtgaatgcactttgt |
424 |
Q |
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| T |
1175765 |
cttttctaatgcgaatgcactttgt |
1175741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 311 - 408
Target Start/End: Original strand, 1237579 - 1237676
Alignment:
| Q |
311 |
ttataatggtactagtgcaatggnnnnnnnncattggcaaaattacacagagatcgaagcaaacatagaagttaactaaaaataaaaaccttttctaa |
408 |
Q |
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| T |
1237579 |
ttataatggtactagtgcaatggtcttttttcattggcaaaattccacagagatcgaagcaaacatagaagttaactaaaaataaaaaccttttctaa |
1237676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 7e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 5197119 - 5196940
Alignment:
| Q |
15 |
gtggtgttagggtcggagaaaggtgagaagatgacagagggttggaggcgcgaagaatgggggtggcggtggtggtgagtggtggtgttagtgatatgtg |
114 |
Q |
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| T |
5197119 |
gtggtgttagggtcggagaaaggtgagaagatgacagagggttggaggcgcgaagaataggggtggcggtggtggtgagtggtggtgttagtgatctgtg |
5197020 |
T |
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| Q |
115 |
gagatggagaaatgagagagaagagagcgaagggaaagactcgtgtttgtttttcttgcattgataaaataaataataaa |
194 |
Q |
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| T |
5197019 |
gagatggagaaatgagagagaagagagcgaagggaaagacttgtgtttgtttttcttgcattgataaaataaataataaa |
5196940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 55038914 - 55039206
Alignment:
| Q |
13 |
tggtggtgttagggtcggagaaaggtgagaagatgacagagggttggaggcgcgaagaatgggggtggcggtggtggtgagtggtggtgttagtgatatg |
112 |
Q |
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| T |
55038914 |
tggtggtgttagggtcggagaagggtgagaagatgacagagggttggag---------atggag-tggcggtggtggtg----gtggtgttagtgatctg |
55038999 |
T |
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| Q |
113 |
tggagatggagaaatgagagagaagagagcgaagggaaagactcgtgtttgtttttcttgcattgataaaata----------aataataaaggccactg |
202 |
Q |
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| T |
55039000 |
tggagatggagaaatgagagagaagagagcgaagggaaagactcgtgtttgtttttcttgaattgataaaataaataataaataataataaatgccactg |
55039099 |
T |
|
| Q |
203 |
ttgctgtgtttttcttgcattaataaaatnnnnnnnntaataacaaatgccatctaggtgtgtgtatatgggtggtaggggaaagtgtgtgttcatgaat |
302 |
Q |
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| T |
55039100 |
ttgctgggtttttcttacattaataaaat-aaaaaaataataacaaatgccatttaggtgtgtgtatatgggtggtaggggaaaatgtgtgttgatgaat |
55039198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 8004322 - 8004033
Alignment:
| Q |
13 |
tggtggtgttagggtcggagaaaggtgagaagatgacagagggttggaggcgcgaagaatgggggtggcggtggtggtgagtggtggtgttagtgatatg |
112 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| |||| || |
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| T |
8004322 |
tggtggtgttagggttggagaagggtgagaagatgacagagggttggaagcgcggagaatgggggtggcggtggtggtg----------ttaatgatttg |
8004233 |
T |
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| Q |
113 |
tggagatggagaaatgagagagaagagagcgaagggaaagactcgtgtttgtttttcttgcattgataaaataaataa----------taaaggccactg |
202 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
8004232 |
tggagatgaagaaatgagagagaagagagcgaagggaaagactcgtgtttgtttttcttgcattgataaaataaataataaataataataaatgccactg |
8004133 |
T |
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| Q |
203 |
ttgctgtgtttttcttgcattaataaaatnnnnnnnntaataacaaatgccatctaggtgtgtgtatatgggtggtaggggaaagtgtgtgttcatgaat |
302 |
Q |
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| T |
8004132 |
ttgctgtg-ttttcttgcattaataaaat-aaaaaaataataacaaatgccatcta--cgtgtgtatatggatggtagggaaaaatgtgtgttcatgaat |
8004037 |
T |
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