View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9527_high_10 (Length: 219)
Name: NF9527_high_10
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 5554192 - 5554376
Alignment:
| Q |
20 |
aatctgactgtaaactaataaacaaccacagacaaaacagtggtaaccaacaccacaaataaatatcgacataaacataataagacacattccacatccc |
119 |
Q |
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| T |
5554192 |
aatctgactgtaaactaataaacaaccacagacaaaacagtggtaaccaacaccacaaataaatatcgacataaacctaa---gacacattccacatccc |
5554288 |
T |
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| Q |
120 |
actcaaataaggggtattagagtgatttgaaggcttatccagaaaccatttttaaaaggagaacttaattttattcaccaagtattat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
5554289 |
actcaaataaggggtattagagtgatttgaaggcttatccagaaaccatctttaaaaggagaacttaattttattcaccaaatattat |
5554376 |
T |
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