View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9527_high_3 (Length: 475)
Name: NF9527_high_3
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9527_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 35205280 - 35205462
Alignment:
| Q |
1 |
aaaggacttatgttggacaagagagtgaaacaacaaaacacgtgacacaaggggtgtgttataagaaattaaatgcaatagcagtaaatcattatcaggt |
100 |
Q |
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| T |
35205280 |
aaaggacttatgttggacaagagagtgaaacaacaaaacacgtgacacagggggtgtgttataagaaattaaatgcaatagcagtaaatcattatcaggt |
35205379 |
T |
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| Q |
101 |
atagaaataaaataactcacataatcgccatggccgggtgcacttgaattggtttgatcagaccaagaagaatattcaatatatgtt |
187 |
Q |
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| T |
35205380 |
atagaaataaaataactcacataatcgccat----gggtgcacttgaattggtttgatcagaccaagaagaatattcaatatatgtt |
35205462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 195 - 357
Target Start/End: Original strand, 35206010 - 35206172
Alignment:
| Q |
195 |
catgataaaaacaaaaggagttcctcagcacacaaacacttggtgttacatatgccaccttcttcgaattcaaagggggcatcaactgtgtgtgcgtctc |
294 |
Q |
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| T |
35206010 |
catgataaaaacaaaaggagttcctcagcacacaaatacttggtgttacatatgccacctacttcgaattcaaagggggcatcaactgtgtgtgcgtctc |
35206109 |
T |
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| Q |
295 |
cgtacctagatcaagcgaaataatcccgaattgataaacaatatcatcattcccagggtcaat |
357 |
Q |
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| T |
35206110 |
cgtacctagatcaagcgaaataatcccgaattgataaacaagatcatcattcccagggtcaat |
35206172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 368 - 460
Target Start/End: Original strand, 35206303 - 35206395
Alignment:
| Q |
368 |
ttagctttcaattcatgagagtggtgctgaccggttgctaaaaaatgatttcaaaatggattgtgtggtcggaatttttgttactcatacatg |
460 |
Q |
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| T |
35206303 |
ttagctttcaattcatgagagtcgtgctgaccggttgctaaaaaatgatttcaaaatggattgtgtggtcggaatttttgttactcatacatg |
35206395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 319
Target Start/End: Complemental strand, 20456485 - 20456362
Alignment:
| Q |
196 |
atgataaaaacaaaaggagttcctcagcacacaaacacttggtgttacatatgccaccttcttcgaattcaaagggggcatcaactgtgtgtgcgtctcc |
295 |
Q |
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| T |
20456485 |
atgataaaaacaaaaggagttcatcaacacacaaacacttgcatatgcacatgacaccttctcacaacttggagggggcatcaactttgtgtatgtctca |
20456386 |
T |
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| Q |
296 |
gtacctagatcaagcgaaataatc |
319 |
Q |
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| T |
20456385 |
gtacctagatcaagggaaacaatc |
20456362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 319
Target Start/End: Complemental strand, 20414790 - 20414739
Alignment:
| Q |
268 |
agggggcatcaactgtgtgtgcgtctccgtacctagatcaagcgaaataatc |
319 |
Q |
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| T |
20414790 |
agggggcatcaactgtgtgtatgtctcagtacttagatcaagcgaaacaatc |
20414739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 7306188 - 7306224
Alignment:
| Q |
142 |
acttgaattggtttgatcagaccaagaagaatattca |
178 |
Q |
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| T |
7306188 |
acttgaattggtgtgatcagagcaagaagaatattca |
7306224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 21218796 - 21218832
Alignment:
| Q |
197 |
tgataaaaacaaaaggagttcctcagcacacaaacac |
233 |
Q |
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| T |
21218796 |
tgataaaaacaaaaggagttcatcaacacacaaacac |
21218832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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