View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9527_high_8 (Length: 246)

Name: NF9527_high_8
Description: NF9527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9527_high_8
NF9527_high_8
[»] chr2 (3 HSPs)
chr2 (9-229)||(37401947-37402166)
chr2 (57-91)||(18570996-18571030)
chr2 (59-91)||(34993983-34994015)
[»] chr5 (1 HSPs)
chr5 (128-229)||(42945256-42945366)
[»] scaffold0623 (1 HSPs)
scaffold0623 (178-227)||(5864-5913)
[»] chr6 (2 HSPs)
chr6 (57-91)||(9024177-9024211)
chr6 (57-89)||(7942279-7942311)
[»] chr4 (3 HSPs)
chr4 (57-90)||(18513243-18513276)
chr4 (57-140)||(34589661-34589741)
chr4 (59-91)||(35723385-35723417)
[»] chr1 (1 HSPs)
chr1 (57-90)||(30847722-30847755)
[»] chr7 (3 HSPs)
chr7 (63-120)||(41811668-41811730)
chr7 (59-91)||(4909177-4909209)
chr7 (57-85)||(38134413-38134441)
[»] chr3 (2 HSPs)
chr3 (57-90)||(23144101-23144134)
chr3 (61-93)||(40150570-40150602)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 37402166 - 37401947
Alignment:
Q  9 gcagcacagacacgaacaaatcgacaccgattataattttnnnnnnnntgacataattcaatgtaatcatatgtgtcagtgtctgcgtcagacatgatag 108  Q
    |||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37402166 gcagcacagacacgaacaaatcgacaccgattataattt-aaaaaaaatgacataattcaatgtaatcatatgtgtcagtgtctgcgtcagacatgatag 37402068  T
Q  109 gtatccgacatcaagacacgcctaatccgaggtgtatctatagttcataaaagattaaaataaaaaacacatagttaacctgtttattaaaagcttccat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37402067 gtatccgacatcaagacacgcctaatccgaggtgtatctatagttcataaaagattaaaataaaaaacacatagttaacctgtttattaaaagcttccat 37401968  T
Q  209 tcccatatcagaactgcttct 229  Q
    |||||||||||||||||||||    
T  37401967 tcccatatcagaactgcttct 37401947  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 18570996 - 18571030
Alignment:
Q  57 tgacataattcaatgtaatcatatgtgtcagtgtc 91  Q
    |||||||||||||||||||||||||||||||||||    
T  18570996 tgacataattcaatgtaatcatatgtgtcagtgtc 18571030  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 34994015 - 34993983
Alignment:
Q  59 acataattcaatgtaatcatatgtgtcagtgtc 91  Q
    ||||||||||||||||| |||||||||||||||    
T  34994015 acataattcaatgtaattatatgtgtcagtgtc 34993983  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 128 - 229
Target Start/End: Original strand, 42945256 - 42945366
Alignment:
Q  128 gcctaatccgaggtgtatctatagttcataaaagattaaaataaa---------aaacacatagttaacctgtttattaaaagcttccattcccatatca 218  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||         |||||||||||| |||| ||||||||||||||| ||||||||||||    
T  42945256 gcctaatccgaggtgtatctataattcataaaagattaaaattaactaagcagaaaacacatagttgacctttttattaaaagcttcaattcccatatca 42945355  T
Q  219 gaactgcttct 229  Q
    |||||||||||    
T  42945356 gaactgcttct 42945366  T

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Target: scaffold0623 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 5864 - 5913
Alignment:
Q  178 catagttaacctgtttattaaaagcttccattcccatatcagaactgctt 227  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  5864 catagttcacctgtttattaaaagtttccattcccatatcagaactgctt 5913  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 9024211 - 9024177
Alignment:
Q  57 tgacataattcaatgtaatcatatgtgtcagtgtc 91  Q
    |||||||||||||||||||||||||||||||||||    
T  9024211 tgacataattcaatgtaatcatatgtgtcagtgtc 9024177  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 7942279 - 7942311
Alignment:
Q  57 tgacataattcaatgtaatcatatgtgtcagtg 89  Q
    ||||||||||||||||||||| |||||||||||    
T  7942279 tgacataattcaatgtaatcacatgtgtcagtg 7942311  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 18513276 - 18513243
Alignment:
Q  57 tgacataattcaatgtaatcatatgtgtcagtgt 90  Q
    ||||||||||||||||||||||||||||||||||    
T  18513276 tgacataattcaatgtaatcatatgtgtcagtgt 18513243  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 140
Target Start/End: Complemental strand, 34589741 - 34589661
Alignment:
Q  57 tgacataattcaatgtaatcatatgtgtcagtgtctgcgtcagacatgataggtatccgacatcaagacacgcctaatccgagg 140  Q
    ||||||||||||||||||||  ||||||| ||||| | ||| |||| |||| ||||| |||| | || ||||||||||||||||    
T  34589741 tgacataattcaatgtaatc--atgtgtc-gtgtcagtgtcggacacgatacgtatctgacaccgaggcacgcctaatccgagg 34589661  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 35723417 - 35723385
Alignment:
Q  59 acataattcaatgtaatcatatgtgtcagtgtc 91  Q
    ||||||||||||||||| |||||||||||||||    
T  35723417 acataattcaatgtaattatatgtgtcagtgtc 35723385  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 30847755 - 30847722
Alignment:
Q  57 tgacataattcaatgtaatcatatgtgtcagtgt 90  Q
    ||||||||||||||||||||||||||||||||||    
T  30847755 tgacataattcaatgtaatcatatgtgtcagtgt 30847722  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 41811668 - 41811730
Alignment:
Q  63 aattcaatgtaatcatatgtgtcagtgtc-----tgcgtcagacatgataggtatccgacatc 120  Q
    |||||||||||||||||||||||||||||      | ||||||||||||| ||||||||||||    
T  41811668 aattcaatgtaatcatatgtgtcagtgtcgtgttggtgtcagacatgatatgtatccgacatc 41811730  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 4909177 - 4909209
Alignment:
Q  59 acataattcaatgtaatcatatgtgtcagtgtc 91  Q
    |||||||||| ||||||||||||||||||||||    
T  4909177 acataattcattgtaatcatatgtgtcagtgtc 4909209  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 38134441 - 38134413
Alignment:
Q  57 tgacataattcaatgtaatcatatgtgtc 85  Q
    |||||||||||||||||||||||||||||    
T  38134441 tgacataattcaatgtaatcatatgtgtc 38134413  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 23144134 - 23144101
Alignment:
Q  57 tgacataattcaatgtaatcatatgtgtcagtgt 90  Q
    |||||||||||||||||||||||||||| |||||    
T  23144134 tgacataattcaatgtaatcatatgtgttagtgt 23144101  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 40150602 - 40150570
Alignment:
Q  61 ataattcaatgtaatcatatgtgtcagtgtctg 93  Q
    ||||||||||||||||||||||||| |||||||    
T  40150602 ataattcaatgtaatcatatgtgtcggtgtctg 40150570  T

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